sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4nmd	FDA	Bifunctional protein PutA

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4nmd	FDA	Bifunctional protein PutA	/	1.000
4q73	FAD	Bifunctional protein PutA	/	0.544
4q72	FAD	Bifunctional protein PutA	/	0.530
1tj2	FAD	Bifunctional protein PutA	1.5.5.2	0.526
4q71	FAD	Bifunctional protein PutA	/	0.520
2fzm	FAD	Bifunctional protein PutA	1.5.5.2	0.512
1tj1	FAD	Bifunctional protein PutA	1.5.5.2	0.506
1tj0	FAD	Bifunctional protein PutA	1.5.5.2	0.503
2fzn	FAD	Bifunctional protein PutA	1.5.5.2	0.487
3haz	FAD	Bifunctional protein PutA	/	0.465
3e2s	FAD	Bifunctional protein PutA	1.5.5.2	0.442