sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4mpr	TPP	Benzoylformate decarboxylase	4.1.1.7

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4mpr	TPP	Benzoylformate decarboxylase	4.1.1.7	1.000
4gm4	TZD	Benzoylformate decarboxylase	4.1.1.7	0.855
4gg1	TZD	Benzoylformate decarboxylase	4.1.1.7	0.699
1po7	TZD	Benzoylformate decarboxylase	4.1.1.7	0.631
4k9o	TPP	Benzoylformate decarboxylase	4.1.1.7	0.554
1mcz	TDP	Benzoylformate decarboxylase	4.1.1.7	0.544
4k9n	TZD	Benzoylformate decarboxylase	4.1.1.7	0.541
4juc	TPP	Benzoylformate decarboxylase	4.1.1.7	0.525
1mcz	RMN	Benzoylformate decarboxylase	4.1.1.7	0.518
4juf	TPP	Benzoylformate decarboxylase	4.1.1.7	0.513
3fzn	D7K	Benzoylformate decarboxylase	4.1.1.7	0.486
4jub	TPP	Benzoylformate decarboxylase	4.1.1.7	0.473
4mpp	TZD	Benzoylformate decarboxylase	4.1.1.7	0.460
4k9p	TPP	Benzoylformate decarboxylase	4.1.1.7	0.449