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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mmd29ENa(+):neurotransmitter symporter (Snf family)

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4mmd29ENa(+):neurotransmitter symporter (Snf family)/1.000
4mmf29QNa(+):neurotransmitter symporter (Snf family)/0.789
4mme29QNa(+):neurotransmitter symporter (Snf family)/0.582
4mm9FVXNa(+):neurotransmitter symporter (Snf family)/0.527
4mm729JNa(+):neurotransmitter symporter (Snf family)/0.502
4mmc29JNa(+):neurotransmitter symporter (Snf family)/0.472
4mm48PRNa(+):neurotransmitter symporter (Snf family)/0.466