Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mkb28VGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4mkb28VGenome polyprotein2.7.7.481.000
3bsc2PDGenome polyprotein2.7.7.480.573
4mka2AYGenome polyprotein2.7.7.480.567
3tyvHI3Genome polyprotein2.7.7.480.490
2giqNN2Genome polyprotein2.7.7.480.481
4mk928RGenome polyprotein2.7.7.480.472
2xi3GTPGenome polyprotein2.7.7.480.456
3u4r08FGenome polyprotein2.7.7.480.450
4ih61EPGenome polyprotein2.7.7.480.449
2gc8885Polyprotein/0.443
3hkwIX6Genome polyprotein2.7.7.480.443