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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mka2AYGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4mka2AYGenome polyprotein2.7.7.481.000
4mkb28VGenome polyprotein2.7.7.480.741
4mk928RGenome polyprotein2.7.7.480.638
3hkwIX6Genome polyprotein2.7.7.480.606
3u4r08FGenome polyprotein2.7.7.480.597
3br9DEYGenome polyprotein2.7.7.480.577
3igvB80Genome polyprotein2.7.7.480.565
3u4o08EGenome polyprotein2.7.7.480.553
3bsc2PDGenome polyprotein2.7.7.480.535
3ska053Genome polyprotein2.7.7.480.508
2gc8885Polyprotein/0.487
1nb6UTPGenome polyprotein2.7.7.480.481
3d28B34Genome polyprotein2.7.7.480.471
3uph0C1Genome polyprotein2.7.7.480.464
3tyvHI3Genome polyprotein2.7.7.480.459
3g86T18Genome polyprotein2.7.7.480.457