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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mk828QGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4mk828QGenome polyprotein2.7.7.481.000
4mk728OGenome polyprotein2.7.7.480.538
3bsa1PDGenome polyprotein2.7.7.480.498
3d5m4MSGenome polyprotein2.7.7.480.480
1yvfPH7Polyprotein/0.475
1z4uPH9Polyprotein/0.469
4eaw0NQGenome polyprotein2.7.7.480.468
3h59H59Genome polyprotein2.7.7.480.467
3upi0C2Genome polyprotein2.7.7.480.467
3gnwXNCGenome polyprotein2.7.7.480.451
3h2lYAKGenome polyprotein2.7.7.480.444
3gnvXNZGenome polyprotein2.7.7.480.440