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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mitGTPRho-related protein racC

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4mitGTPRho-related protein racC/1.000
3sbeGNPRas-related C3 botulinum toxin substrate 1/0.558
3i3sGNPGTPase HRas/0.555
3kz1GSPTransforming protein RhoA/0.548
3oivGNPGTPase HRas/0.548
1cxzGSPTransforming protein RhoA/0.542
1kmqGNPTransforming protein RhoA/0.540
3v4fGNPGTPase HRas/0.537
1xtsGTPGTP-binding protein Rheb/0.536
3lbnGNPGTPase HRas/0.535
3oiuGNPGTPase HRas/0.535
3rs7GNPGTPase HRas/0.529
1m7bGTPRho-related GTP-binding protein RhoE/0.526
5b2zGNPGTPase HRas/0.525
3rs5GNPGTPase HRas/0.522
5dhaGNPGTP-binding nuclear protein Ran/0.521
3rabGNPRas-related protein Rab-3A/0.517
5hpyGDPTransforming protein RhoA/0.517
1s1cGNPTransforming protein RhoA/0.516
1g17GNPRas-related protein SEC4/0.515
3a6pGTPGTP-binding nuclear protein Ran/0.512
5jljGNPGTP-binding nuclear protein Ran/0.509
1zbdGTPRas-related protein Rab-3A/0.504
3a58GNPGTP-binding protein RHO1/0.502
4dltGNPGTPase HRas/0.500
4lhwGNPRas-related protein Rab-8A/0.500
1xtrGNPGTP-binding protein Rheb/0.499
1ow3GDPTransforming protein RhoA/0.498
3kucGDPRas-related protein Rap-1A/0.497
1z2cGNPRho-related GTP-binding protein RhoC/0.495
3nbzGTPGTP-binding nuclear protein Ran/0.495
3sbdGNPRas-related C3 botulinum toxin substrate 1/0.494
4dlwGNPGTPase HRas/0.493
3w3zGTPGTP-binding nuclear protein Ran/0.492
2gcpGSPRho-related GTP-binding protein RhoC/0.491
3oesGNPGTPase RhebL1/0.490
4rkfGNPRas-related protein Rab-3/0.489
1zc4GNPRas-related protein Ral-A/0.487
1ibrGNPGTP-binding nuclear protein Ran/0.486
3ddcGNPGTPase HRas/0.486
3eg5GNPCell division control protein 42 homolog/0.484
3qbtGNPRas-related protein Rab-8A/0.483
4xoiGTPTransforming protein RhoA/0.483
1e96GTPRas-related C3 botulinum toxin substrate 1/0.482
3e5hGNPRas-related protein Rab-28/0.479
1mh1GNPRas-related C3 botulinum toxin substrate 1/0.474
4nyiGNPGTPase HRas/0.472
1oixGDPRas-related protein Rab-11A/0.471
2zetGTPRas-related protein Rab-27B/0.471
1a2bGSPTransforming protein RhoA/0.469
1zc3GNPRas-related protein Ral-A/0.469
4qxaGTPRas-related protein Rab-9A/0.469
4kvgGTPRas-related protein Rap-1A/0.465
1yzqGNPRas-related protein Rab-6A/0.464
3ea5GDPGTP-binding nuclear protein Ran/0.464
1cs4GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short/0.462
2fjuGSPRas-related C3 botulinum toxin substrate 1/0.462
4js0GNPCell division control protein 42 homolog/0.462
4nyjGNPGTPase HRas/0.462
3bbpGTPRas-related protein Rab-6A/0.460
4o25GTPGTP-binding protein Rheb/0.459
2clsGTPRho-related GTP-binding protein Rho6/0.457
1k5dGNPGTP-binding nuclear protein Ran/0.453
2c5lGTPGTPase HRas/0.452
3tsoGNPRas-related protein Rab-25/0.452
4hdoGNPRas-related protein Rap-1b/0.450
4gzmGSPRas-related C3 botulinum toxin substrate 1/0.449
1t91GTPRas-related protein Rab-7a/0.447
1uadGNPRas-related protein Ral-A/0.447
3oiwGNPGTPase HRas/0.446
2rgeGNPGTPase HRas/0.444
4dsnGCPGTPase KRas/0.444
4uj3GNPRas-related protein Rab-11A/0.442
3kkoGNPRas-related protein M-Ras/0.441
1zd9GDPADP-ribosylation factor-like protein 8A/0.440