Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mihFADPyranose 2-oxidase1.1.3.10

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4mihFADPyranose 2-oxidase1.1.3.101.000
2igoFADPyranose 2-oxidase/0.558
2ignFADPyranose 2-oxidase/0.539
3bg7FADPyranose 2-oxidase/0.528
3k4nFADPyranose 2-oxidase/0.486
4qi5FADCellobiose dehydrogenase/0.480
4qi4FADCellobiose dehydrogenase/0.468
4qi7FADCellobiose dehydrogenase/0.452