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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.121.000
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.747
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.609
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.606
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.596
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.578
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.575
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.571
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.558
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.555
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.550
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.533
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.527
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.522
2gvgNMNNicotinamide phosphoribosyltransferase2.4.2.120.472
2g96NMNNicotinamide phosphoribosyltransferase2.4.2.120.467
2h3dNMNNicotinamide phosphoribosyltransferase2.4.2.120.444