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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m10ICDProstaglandin G/H synthase 21.14.99.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4m10ICDProstaglandin G/H synthase 21.14.99.11.000
4m11MXMProstaglandin G/H synthase 21.14.99.10.541
3rr3FLRProstaglandin G/H synthase 21.14.99.10.520
5ikrID8Prostaglandin G/H synthase 21.14.99.10.519
3ln1CELProstaglandin G/H synthase 21.14.99.10.518
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.513
3q7dNPXProstaglandin G/H synthase 21.14.99.10.512
4ph9IBPProstaglandin G/H synthase 21.14.99.10.505
3mqe416Prostaglandin G/H synthase 21.14.99.10.500
3ntgD72Prostaglandin G/H synthase 21.14.99.10.480
4coxIMNProstaglandin G/H synthase 21.14.99.10.476
4rrwLURProstaglandin G/H synthase 21.14.99.10.472
4rrzLURProstaglandin G/H synthase 21.14.99.10.472
4otyLURProstaglandin G/H synthase 21.14.99.10.465
3pghFLPProstaglandin G/H synthase 21.14.99.10.457
4rrxLURProstaglandin G/H synthase 21.14.99.10.449
2oyuIMSProstaglandin G/H synthase 11.14.99.10.447