Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4lwx | MU2 | Ribosome inactivating protein |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
4lwx | MU2 | Ribosome inactivating protein | / | 1.000 | |
4jtp | ASC | Ribosome inactivating protein | / | 0.668 | |
3qji | MGP | Ribosome inactivating protein | / | 0.593 | |
4emr | MGP | Ribosome inactivating protein | / | 0.589 | |
3u8f | FGM | Ribosome inactivating protein | / | 0.582 | |
4zz6 | CTP | Ribosome inactivating protein | / | 0.548 | |
5ilw | URI | Ribosome inactivating protein | / | 0.543 | |
1mrk | FMC | Ribosome-inactivating protein alpha-trichosanthin | 3.2.2.22 | 0.494 | |
3exf | TPP | Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial | 1.2.4.1 | 0.455 | |
3exf | TPP | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | 1.2.4.1 | 0.455 | |
1qrs | ATP | Glutamine--tRNA ligase | 6.1.1.18 | 0.454 | |
4glx | 0XS | DNA ligase | 6.5.1.2 | 0.453 | |
1ni4 | TPP | Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial | 1.2.4.1 | 0.451 | |
1ni4 | TPP | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | 1.2.4.1 | 0.451 | |
2b8j | ADN | Class B acid phosphatase | 3.1.3.2 | 0.444 | |
1tkc | M6T | Transketolase 1 | 2.2.1.1 | 0.443 | |
3prf | FP3 | Serine/threonine-protein kinase B-raf | 2.7.11.1 | 0.443 |