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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ldkFADFAD-linked sulfhydryl oxidase ALR1.8.3.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4ldkFADFAD-linked sulfhydryl oxidase ALR1.8.3.21.000
3tk0FADFAD-linked sulfhydryl oxidase ALR1.8.3.20.543
3u5sFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.539
3r7cFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.528
3u2lFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.528
1oqcFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.519
3u2mFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.496