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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4la7A1OAbscisic acid receptor PYL2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4la7A1OAbscisic acid receptor PYL2/1.000
4lg5A1OAbscisic acid receptor PYL2/0.580
3ujlA8SAbscisic acid receptor PYL2/0.500
3nefPYVAbscisic acid receptor PYL1/0.497
3nmnPYVAbscisic acid receptor PYL1/0.492
3zvuA8SAbscisic acid receptor PYR1/0.466
3njoP2MAbscisic acid receptor PYR1/0.465
3w9rA8SAbscisic acid receptor PYL9/0.445
4ds8A8SAbscisic acid receptor PYL3/0.442