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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4l3q926Glucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4l3q926Glucokinase2.7.1.21.000
1v4sMRKGlucokinase2.7.1.20.624
3a0iAJIGlucokinase2.7.1.20.584
3id8MRKGlucokinase2.7.1.20.532
4mlhVO2Glucokinase2.7.1.20.514
3h1vTK1Glucokinase2.7.1.20.507
4mleVO1Glucokinase2.7.1.20.502
3imxB84Glucokinase2.7.1.20.473
3fr0AJBGlucokinase2.7.1.20.467
3vey0H5Glucokinase2.7.1.20.448