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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4klvKLVUncharacterized protein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4klvKLVUncharacterized protein/1.000
4kos4KOUncharacterized protein/0.607
4kovKOVUncharacterized protein/0.602
4kowCFXUncharacterized protein/0.586
4koyCSCUncharacterized protein/0.576
3pgpACOUncharacterized protein/0.529
4kubCOAUncharacterized protein/0.521
4oadCLMUncharacterized protein/0.493
4oaeCLMUncharacterized protein/0.466