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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k5y1Q5Corticotropin-releasing factor receptor 1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
4k5y1Q5Corticotropin-releasing factor receptor 1/1.000
4z9g1Q5Corticotropin-releasing factor receptor 1/0.609
1fm4DXCMajor pollen allergen Bet v 1-L/0.502
3vt7VDXVitamin D3 receptor/0.499
3oquA8SAbscisic acid receptor PYL9/0.494
1dr3HBIDihydrofolate reductase1.5.1.30.492
3d84NDPDihydrofolate reductase1.5.1.30.490
3qlrNDPDihydrofolate reductase1.5.1.30.489
1ai9NDPDihydrofolate reductase1.5.1.30.487
3oafOAGDihydrofolate reductase1.5.1.30.487
3gwfNAPCyclohexanone monooxygenase/0.486
1osvCHCBile acid receptor/0.484
3nxxNDPDihydrofolate reductase1.5.1.30.484
1dkfBMSRetinoic acid receptor alpha/0.482
4jvb1M0Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.482
3vt8YI3Vitamin D3 receptor/0.481
3vrwYS5Vitamin D3 receptor/0.480
3vt9YI4Vitamin D3 receptor/0.476
5k2cZMAAdenosine receptor A2a/0.476
1ia1NDPDihydrofolate reductase1.5.1.30.475
5k2aZMAAdenosine receptor A2a/0.475
2hqpNDPDihydrofolate reductase1.5.1.30.474
4hle17VPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.474
1m78NDPDihydrofolate reductase1.5.1.30.471
3clbNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.470
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.470
3irm1CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.469
3qlsNDPDihydrofolate reductase1.5.1.30.468
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.468
3pwhZMAAdenosine receptor A2a/0.468
2wd8VGFPteridine reductase/0.467
3dgaNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.467
4j6dTESCytochrome P450 monooxygenase/0.467
4wa9AXITyrosine-protein kinase ABL12.7.10.20.467
3s7a684Dihydrofolate reductase1.5.1.30.466
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.466
2ix5FADAcyl-coenzyme A oxidase 4, peroxisomal1.3.3.60.465
2qo5CHDFatty acid-binding protein 10-A, liver basic/0.465
3s3vTOPDihydrofolate reductase1.5.1.30.464
3vtbTKAVitamin D3 receptor/0.464
4h4uNDPBiphenyl dioxygenase ferredoxin reductase subunit/0.464
4iaq2GM5-hydroxytryptamine receptor 1B/0.464
2acwUPGGlycosyltransferase/0.463
2h2qNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.463
2jn3JN3Fatty acid-binding protein, liver/0.463
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.463
3ua506XCytochrome P450 2B61.14.130.463
5jtbZMAAdenosine receptor A2a/0.463
3qlwN22Dihydrofolate reductase1.5.1.30.462
5kgpACOPredicted acetyltransferase/0.462
1dr2TAPDihydrofolate reductase1.5.1.30.461
2bu9HFVIsopenicillin N synthase1.21.3.10.461
4g95OAGDihydrofolate reductase1.5.1.30.461
4h4xFADBiphenyl dioxygenase ferredoxin reductase subunit/0.461
4cd2FOLDihydrofolate reductase1.5.1.30.460
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.460
1rd4L08Integrin alpha-L/0.459
2om9AJAPeroxisome proliferator-activated receptor gamma/0.459
2q4wFADCytokinin dehydrogenase 71.5.99.120.459
3dg8NDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.459
4j6cSTRCytochrome P450 monooxygenase/0.459
2qd3CHDFerrochelatase, mitochondrial4.99.1.10.458
3vtdTKDVitamin D3 receptor/0.458
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.458
4iarERM5-hydroxytryptamine receptor 1B/0.458
1db1VDXVitamin D3 receptor/0.457
1rb3MTXDihydrofolate reductase1.5.1.30.457
1zdwFLVPrenyltransferase/0.457
3cx5SMACytochrome b/0.457
1diuBDMDihydrofolate reductase1.5.1.30.456
1n83CLRNuclear receptor ROR-alpha/0.456
3w5p4OAVitamin D3 receptor/0.456
4cf7ADPAdenylate kinase/0.456
1fwkADPHomoserine kinase2.7.1.390.455
1iyzNDPProbable quinone oxidoreductase/0.455
2ft9CHDFatty acid-binding protein 2, liver/0.455
2iltNN1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.455
2vcmM11Isopenicillin N synthase1.21.3.10.455
3csdEMOPutative ketoacyl reductase1.3.10.455
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.455
4j6bPLOCytochrome P450 monooxygenase/0.455
3emlZMAAdenosine receptor A2a/0.455
1mvsDTMDihydrofolate reductase1.5.1.30.454
1uioHPRAdenosine deaminase3.5.4.40.454
1xddAAYIntegrin alpha-L/0.454
2vbpVB1Isopenicillin N synthase1.21.3.10.454
3qm4PN0Cytochrome P450 2D6/0.454
4kl9NDPDihydrofolate reductase1.5.1.30.454
4yp7NAPNicotinamide-nucleotide adenylyltransferase2.7.7.10.454
1drhNAPDihydrofolate reductase1.5.1.30.453
2cig1DGDihydrofolate reductase1.5.1.30.453
2hw2RFPRifampin ADP-ribosyl transferase/0.453
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.453
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.453
4hnc0UTMandelate racemase/0.453
4jv618FRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.453
5kf1ACOPredicted acetyltransferase/0.453
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
1cqp803Integrin alpha-L/0.452
1dr3TAPDihydrofolate reductase1.5.1.30.452
1drfFOLDihydrofolate reductase1.5.1.30.452
1dz6CAMCamphor 5-monooxygenase1.14.15.10.452
3tmz06XCytochrome P450 2B41.14.14.10.452
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.452
4jvf17XRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta/0.452
4o71CPBBromodomain-containing protein 4/0.452
1hvyD16Thymidylate synthase2.1.1.450.451
1nq7ARLNuclear receptor ROR-beta/0.451
3gwfFADCyclohexanone monooxygenase/0.451
3zoiM2WIsopenicillin N synthase1.21.3.10.451
5uviZMAAdenosine receptor A2a/0.451
1qxlFR8Adenosine deaminase3.5.4.40.450
1uxjNADMalate dehydrogenase/0.450
2vxoXMPGMP synthase [glutamine-hydrolyzing]6.3.5.20.450
3a783EVVitamin D3 receptor/0.450
3b2eADPATPase GET3/0.450
3ch6311Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.450
3hbbNAPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.450
4dc0NDPPutative ketoacyl reductase1.3.10.450
4g1z0VPVitamin D3 receptor A/0.450
4ly91YYGlucokinase regulatory protein/0.450
4udrFAD5-(hydroxymethyl)furfural oxidase/0.450
1dr5NAPDihydrofolate reductase1.5.1.30.449
1ot7CHCBile acid receptor/0.449
1rx1NAPDihydrofolate reductase1.5.1.30.449
1s3uTQDDihydrofolate reductase1.5.1.30.449
1txiTX5Vitamin D3 receptor/0.449
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.449
2nrySTUInterleukin-1 receptor-associated kinase 42.7.11.10.449
2y05NAPProstaglandin reductase 1/0.449
2yfeYFEPeroxisome proliferator-activated receptor gamma/0.449
3gytDL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily/0.449
3s79ASDAromatase1.14.14.140.449
3wmxNADNAD dependent epimerase/dehydratase/0.449
4g1y0VOVitamin D3 receptor A/0.449
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.449
1mp0NADAlcohol dehydrogenase class-31.1.1.10.448
1pd9CO4Dihydrofolate reductase1.5.1.30.448
1s19MC9Vitamin D3 receptor/0.448
2hamC33Vitamin D3 receptor/0.448
2po7CHDFerrochelatase, mitochondrial4.99.1.10.448
2xvv9DNSerum albumin/0.448
3zcw4A2Kinesin-like protein KIF11/0.448
4at3LTIBDNF/NT-3 growth factors receptor2.7.10.10.448
4b4oNDPEpimerase family protein SDR39U1/0.448
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
4h50NAPBiphenyl dioxygenase ferredoxin reductase subunit/0.448
4mxxDB8Proto-oncogene tyrosine-protein kinase Src2.7.10.20.448
4xz3COAAcyl-CoA synthetase (NDP forming)/0.448
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.448
5hi6MTXDihydrofolate reductase/0.448
1d3gBREDihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.447
1errRALEstrogen receptor/0.447
1fm6BRLPeroxisome proliferator-activated receptor gamma/0.447
1pkfEPDEpothilone C/D epoxidase1.140.447
1tw4CHDFatty acid-binding protein, liver/0.447
1v35NAIEnoyl-ACP reductase/0.447
1wxyFRKAdenosine deaminase3.5.4.40.447
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.447
2vn0TDZCytochrome P450 2C8/0.447
3cwkREACellular retinoic acid-binding protein 2/0.447
3gw9VNILanosterol 14-alpha-demethylase/0.447
3ijdC2FMethylenetetrahydrofolate reductase/0.447
3tqaNDPDihydrofolate reductase/0.447
4a84DXCMajor pollen allergen Bet v 1-A/0.447
4anv751Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.447
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.447
4ia2BIVVitamin D3 receptor A/0.447
4iah1DXAlr2278 protein/0.447
4kwi1TJReductase homolog/0.447
4r20AERCytochrome P450 family 17 polypeptide 2/0.447
4ure1PSCyclohexanol dehydrogenase/0.447
5iqiGNPBifunctional AAC/APH2.3.10.447
1n4hREANuclear receptor ROR-beta/0.446
2hcdBIVVitamin D3 receptor A/0.446
2yg4FADPutrescine oxidase/0.446
3a4oSTUTyrosine-protein kinase Lyn2.7.10.20.446
3cukFADD-amino-acid oxidase1.4.3.30.446
3nj0PYVAbscisic acid receptor PYL2/0.446
3poz03PEpidermal growth factor receptor2.7.10.10.446
3vrtYS2Vitamin D3 receptor/0.446
4ejgNCTCytochrome P450 2A131.14.14.10.446
5eccNAPDehydrofolate reductase type I/0.446
1dg8NDPDihydrofolate reductase1.5.1.30.445
1jtvTESEstradiol 17-beta-dehydrogenase 11.1.1.620.445
1v7aFRCAdenosine deaminase3.5.4.40.445
1w06W05Isopenicillin N synthase1.21.3.10.445
2rhrEMOPutative ketoacyl reductase1.3.10.445
2znnS44Peroxisome proliferator-activated receptor alpha/0.445
3ey4352Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.445
3up0D7SaceDAF-12/0.445
3vt65YIVitamin D3 receptor/0.445
3zu2NAIEnoyl-[acyl-carrier-protein] reductase [NADH]/0.445
4gb90WRPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
4y8wSTRSteroid 21-hydroxylase/0.445
5iu86DZAdenosine receptor A2a/0.445
1mvtDTMDihydrofolate reductase1.5.1.30.444
1t9gFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.444
1uzwCDHIsopenicillin N synthase1.21.3.10.444
1z1fSTLResveratrol synthase/0.444
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.444
2vbdV10Isopenicillin N synthase1.21.3.10.444
2zl9VDAVitamin D3 receptor/0.444
2zynBCDPeriplasmic binding protein/0.444
3kpkFADSulfide-quinone reductase/0.444
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
3sw85LIPeptide deformylase/0.444
4b5pACOAlpha-tubulin N-acetyltransferase 1/0.444
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.444
4uyf73BBromodomain-containing protein 2/0.444
4wdb2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.444
1d3hA26Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.443
1ie8KH1Vitamin D3 receptor/0.443
1menGARTrifunctional purine biosynthetic protein adenosine-32.1.2.20.443
1qiqACCIsopenicillin N synthase1.21.3.10.443
1umlFR4Adenosine deaminase3.5.4.40.443
1xuoLA1Integrin alpha-L/0.443
2harOCCVitamin D3 receptor/0.443
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.443
3fgoCZASarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.443
3kjrNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.443
3zkuHCVIsopenicillin N synthase1.21.3.10.443
4bb5HD2Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.443
4ful0VUPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
4ktkKTKCytochrome P450/0.443
4mlhVO2Glucokinase2.7.1.20.443
4pkl1GHUncharacterized protein/0.443
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.442
1lf3EH5Plasmepsin-23.4.23.390.442
1ndzFR5Adenosine deaminase3.5.4.40.442
1rf7DHFDihydrofolate reductase1.5.1.30.442
1rk3VDXVitamin D3 receptor/0.442
1sn5T3Transthyretin/0.442
1upw444Oxysterols receptor LXR-beta/0.442
2azzTCHPhospholipase A2, major isoenzyme3.1.1.40.442
2dteNAIGlucose 1-dehydrogenase related protein/0.442
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.442
3lanKBTGag-Pol polyprotein2.7.7.490.442
3tqhNDPQuinone oxidoreductase/0.442
3zw9NADPeroxisomal bifunctional enzyme1.1.1.350.442
4anuEM7Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.442
4cp4CAMCamphor 5-monooxygenase1.14.15.10.442
4ia1BIVVitamin D3 receptor A/0.442
4ia3BIVVitamin D3 receptor A/0.442
4l8u9AZSerum albumin/0.442
4nb6444Nuclear receptor ROR-gamma/0.442
4qe6JN3Bile acid receptor/0.442
5kghACOPredicted acetyltransferase/0.442
1o5rFR9Adenosine deaminase3.5.4.40.441
1rx8NAPDihydrofolate reductase1.5.1.30.441
1s0zEB1Vitamin D3 receptor/0.441
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
2hasC3OVitamin D3 receptor/0.441
2rg5279Mitogen-activated protein kinase 14/0.441
2zb45OPProstaglandin reductase 21.3.1.480.441
3hdmMMGSerine/threonine-protein kinase Sgk12.7.11.10.441
3ns2PYVAbscisic acid receptor PYL2/0.441
4dfrMTXDihydrofolate reductase1.5.1.30.441
4iae1DXAlr2278 protein/0.441
4ipw1G7Mycocyclosin synthase1.14.21.90.441
4ruoBIVVitamin D3 receptor A/0.441
5k2bZMAAdenosine receptor A2a/0.441
1ezvSMACytochrome b/0.440
1kb9SMACytochrome b/0.440
1uyuCAMCamphor 5-monooxygenase1.14.15.10.440
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.440
2fonFADAcyl-coenzyme A oxidase/0.440
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.440
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.440
3axwTIDCasein kinase II subunit alpha2.7.11.10.440
3gqvNAPEnoyl reductase LovC10.440
3kytHC2Nuclear receptor ROR-gamma/0.440
3n6uTSUHTH-type transcriptional regulator TsaR/0.440
4eh9IRGMitogen-activated protein kinase 14/0.440
4hw319GInduced myeloid leukemia cell differentiation protein Mcl-1/0.440
4nkvAERSteroid 17-alpha-hydroxylase/17,20 lyase/0.440
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.440