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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k5o1OTM1 family aminopeptidase3.4.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4k5o1OTM1 family aminopeptidase3.4.111.000
4k5p1OSM1 family aminopeptidase3.4.110.708
3t8vBTJM1 family aminopeptidase3.4.110.697
3q44D50M1 family aminopeptidase3.4.110.553
3q43D66M1 family aminopeptidase3.4.110.543
4xmxBESAminopeptidase N3.4.11.20.463