sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4jub	TPP	Benzoylformate decarboxylase	4.1.1.7

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4jub	TPP	Benzoylformate decarboxylase	4.1.1.7	1.000
1mcz	TDP	Benzoylformate decarboxylase	4.1.1.7	0.633
1mcz	RMN	Benzoylformate decarboxylase	4.1.1.7	0.605
4juf	TPP	Benzoylformate decarboxylase	4.1.1.7	0.585
4k9n	TZD	Benzoylformate decarboxylase	4.1.1.7	0.585
4k9o	TPP	Benzoylformate decarboxylase	4.1.1.7	0.565
4k9p	TPP	Benzoylformate decarboxylase	4.1.1.7	0.558
4juc	TPP	Benzoylformate decarboxylase	4.1.1.7	0.555
1po7	TZD	Benzoylformate decarboxylase	4.1.1.7	0.552
4gm4	TZD	Benzoylformate decarboxylase	4.1.1.7	0.539
3fzn	D7K	Benzoylformate decarboxylase	4.1.1.7	0.537
4mpr	TPP	Benzoylformate decarboxylase	4.1.1.7	0.528
4gg1	TZD	Benzoylformate decarboxylase	4.1.1.7	0.501
4mpp	TZD	Benzoylformate decarboxylase	4.1.1.7	0.489