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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jtaNAPVoltage-gated potassium channel subunit beta-2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4jtaNAPVoltage-gated potassium channel subunit beta-2/1.000
4jtcNAPVoltage-gated potassium channel subunit beta-2/0.615
4jtdNAPVoltage-gated potassium channel subunit beta-2/0.589
3lnmNAPVoltage-gated potassium channel subunit beta-2/0.579
2r9rNAPVoltage-gated potassium channel subunit beta-2/0.544
4aubNAPL-glyceraldehyde 3-phosphate reductase1.1.10.530
1az2NAPAldose reductase1.1.1.210.505
2c91NAPAflatoxin B1 aldehyde reductase member 2/0.487
2iq0NAPAldose reductase1.1.1.210.481
4g5dNDPProstaglandin F synthase1.1.1.1880.481
3v36NAPAldose reductase1.1.1.210.478
1lqaNDPProtein tas/0.468
1x98NAPAldose reductase1.1.1.210.466
3h7rNAPAldo-keto reductase family 4 member C8/0.466
2j8tNAPAldose reductase1.1.1.210.464
2pf8NDPAldose reductase1.1.1.210.462
2clpNDPAflatoxin B1 aldehyde reductase member 3/0.461
3h7uNAPNADPH-dependent aldo-keto reductase, chloroplastic/0.461
2acqNAPAldose reductase1.1.1.210.460
2acuNAPAldose reductase1.1.1.210.460
2pevNDPAldose reductase1.1.1.210.460
1x96NAPAldose reductase1.1.1.210.455
1adsNAPAldose reductase1.1.1.210.453
1ah4NAPAldose reductase1.1.1.210.451
2acsNAPAldose reductase1.1.1.210.446
3qkzNAPAldose reductase-related protein 11.1.1.210.446
1pz1NAPGeneral stress protein 69/0.443
1z8aNAPAldose reductase1.1.1.210.442
1og6NAPOxidoreductase YdhF10.441
4jtqNAPAldo-keto reductase family 1 member C2/0.440