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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4j7uYTZSepiapterin reductase1.1.1.153

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
4j7uYTZSepiapterin reductase1.1.1.1531.000
4j7xSASSepiapterin reductase1.1.1.1530.629
4hwkSFYSepiapterin reductase1.1.1.1530.618
1nasASESepiapterin reductase1.1.1.1530.563
1sepBIOSepiapterin reductase1.1.1.1530.517
3koo24DBifunctional epoxide hydrolase 23.3.2.100.485
2zbaZBATrichothecene 3-O-acetyltransferase/0.483
1j3iWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.481
4olfHFGProline--tRNA ligase6.1.1.150.478
2hcdBIVVitamin D3 receptor A/0.474
3jwm5WBDihydrofolate reductase/0.474
1xddAAYIntegrin alpha-L/0.473
4h9506UDihydrofolate reductase1.5.1.30.473
2rl52RLVascular endothelial growth factor receptor 22.7.10.10.472
4ktkKTKCytochrome P450/0.472
4qa0SHHHistone deacetylase 83.5.1.980.472
1d3hA26Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.471
3w5p4OAVitamin D3 receptor/0.471
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.471
1xl8152Peroxisomal carnitine O-octanoyltransferase2.3.1.1370.470
2x7hPFNProstaglandin reductase 310.470
1fm7DFVChalcone--flavonone isomerase 15.5.1.60.469
4bgg844Activin receptor type-12.7.11.300.469
4g47TZFMycocyclosin synthase1.14.21.90.469
1aiqCB3Thymidylate synthase/0.467
2pnuENMAndrogen receptor/0.467
4j03FVSBifunctional epoxide hydrolase 23.1.3.760.467
1fmjRTLRetinol dehydratase/0.466
4bfvZVVPantothenate kinase2.7.1.330.466
4ia7BIVVitamin D3 receptor A/0.466
1i58ACPChemotaxis protein CheA2.7.13.30.465
4g1z0VPVitamin D3 receptor A/0.465
1txtCAAHMG-CoA synthase/0.464
3jzfJZKBiotin carboxylase6.3.4.140.464
3invNDPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.463
1i8tFADUDP-galactopyranose mutase5.4.99.90.462
4kwi1TJReductase homolog/0.462
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.462
4qa2SHHHistone deacetylase 83.5.1.980.461
3glmCOOGlutaconyl-CoA decarboxylase alpha subunit/0.460
3l6jZ90Alr2278 protein/0.460
1pq6965Oxysterols receptor LXR-beta/0.459
1qxlFR8Adenosine deaminase3.5.4.40.459
2po7CHDFerrochelatase, mitochondrial4.99.1.10.459
2qo4CHDFatty acid-binding protein 10-A, liver basic/0.459
3d5qT30Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.459
3t3q9PLCytochrome P450 2A61.14.130.459
3vt65YIVitamin D3 receptor/0.459
2o4jVD4Vitamin D3 receptor/0.458
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.458
2xvv9DNSerum albumin/0.458
3fwjCAMCamphor 5-monooxygenase1.14.15.10.458
3mtfA3FActivin receptor type-12.7.11.300.458
3w78CBDFMN-dependent NADH-azoreductase/0.458
4ixgIXGDihydrofolate reductase1.5.1.30.458
4rujVDXVitamin D3 receptor A/0.458
1cqp803Integrin alpha-L/0.457
1r2jFADFkbI/0.457
2tscCB3Thymidylate synthase/0.457
3hub469Mitogen-activated protein kinase 14/0.457
3v49PK0Androgen receptor/0.457
3w5rLOAVitamin D3 receptor/0.457
4gdy0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.457
1l2jETCEstrogen receptor beta/0.456
1rk3VDXVitamin D3 receptor/0.456
1rx8FOLDihydrofolate reductase1.5.1.30.456
1suoCPZCytochrome P450 2B41.14.14.10.456
3lanKBTGag-Pol polyprotein2.7.7.490.456
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.456
4g2gTDHMycocyclosin synthase1.14.21.90.456
1vj3TABDihydrofolate reductase1.5.1.30.455
2qd4CHDFerrochelatase, mitochondrial4.99.1.10.455
2zlaVDBVitamin D3 receptor/0.455
4ha6PXMPyridoxine 4-oxidase/0.455
1ndzFR5Adenosine deaminase3.5.4.40.454
2q5qTPWIndole-3-pyruvate decarboxylase4.1.1.740.454
2uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.454
2vbpVB1Isopenicillin N synthase1.21.3.10.454
2zlcVDXVitamin D3 receptor/0.454
1dyrTOPDihydrofolate reductase1.5.1.30.453
1tvrTB9Gag-Pol polyprotein2.7.7.490.453
1ykdCMPAdenylate cyclase/0.453
3gwfNAPCyclohexanone monooxygenase/0.453
3oom507Activin receptor type-12.7.11.300.453
3p62FMNPentaerythritol tetranitrate reductase/0.453
4bcrWY1Peroxisome proliferator-activated receptor alpha/0.453
4zm6ACON-acetyl-beta-D glucosaminidase/0.453
5ai5BSUBifunctional epoxide hydrolase 23.1.3.760.453
1fmlRTLRetinol dehydratase/0.452
1fp2HMOIsoflavone-7-O-methyltransferase 82.1.1.1500.452
1o5rFR9Adenosine deaminase3.5.4.40.452
1thnADPAnti-sigma F factor/0.452
2pk3A2RGDP-6-deoxy-D-mannose reductase/0.452
3ch6311Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.452
3dvaTPWPyruvate dehydrogenase E1 component subunit alpha1.2.4.10.452
3dvaTPWPyruvate dehydrogenase E1 component subunit beta1.2.4.10.452
3pd4A3GThreonine--tRNA ligase6.1.1.30.452
4bfpSWYTankyrase-22.4.2.300.452
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.452
4fhk0U0Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.452
4geb0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.452
4i8vBHFCytochrome P450 1A11.14.14.10.452
4ly91YYGlucokinase regulatory protein/0.452
4o71CPBBromodomain-containing protein 4/0.452
1axwMTXThymidylate synthase/0.451
2acwUPGGlycosyltransferase/0.451
2hw2RFPRifampin ADP-ribosyl transferase/0.451
2vr1ATFBiotin carboxylase6.3.4.140.451
3e01PZ2Gag-Pol polyprotein2.7.7.490.451
3g5qFADMethylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO/0.451
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.451
4g1d0VKVitamin D3 receptor A/0.451
4m69ANPReceptor-interacting serine/threonine-protein kinase 32.7.11.10.451
4mr61K0Bromodomain-containing protein 2/0.451
1opbRETRetinol-binding protein 2/0.450
3gc9B45Mitogen-activated protein kinase 112.7.11.240.450
3nga3NGCasein kinase II subunit alpha2.7.11.10.450
3uic09TEnoyl-[acyl-carrier-protein] reductase [NADH]/0.450
4bwaN0BPyrrolysine--tRNA ligase/0.450
4dc0NDPPutative ketoacyl reductase1.3.10.450
4dphP65Bifunctional dihydrofolate reductase-thymidylate synthase/0.450
4ho8THMGlucose-1-phosphate thymidylyltransferase/0.450
4iae1DXAlr2278 protein/0.450
4nqmY1ZBromodomain-containing protein 4/0.450
4o701QKBromodomain-containing protein 4/0.450
5h8tRTLRetinol-binding protein 1/0.450
1e8xATPPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.449
1m2qMNXCasein kinase II subunit alpha2.7.11.10.449
1x8lOXRRetinol dehydratase/0.449
3gwfFADCyclohexanone monooxygenase/0.449
3ictADPCoenzyme A disulfide reductase/0.449
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.449
4eh9IRGMitogen-activated protein kinase 14/0.449
4rraA3TProbable threonine--tRNA ligase 26.1.1.30.449
5cvhADPCasein kinase II subunit alpha2.7.11.10.449
1m13HYFNuclear receptor subfamily 1 group I member 2/0.448
1uaeUD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.448
1x7gNAPPutative ketoacyl reductase1.3.10.448
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.448
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.448
2o65MYFSerine/threonine-protein kinase pim-12.7.11.10.448
2p8uCOAHydroxymethylglutaryl-CoA synthase, cytoplasmic2.3.3.100.448
3h3r14HCollagen type IV alpha-3-binding protein/0.448
3sp9IL2Peroxisome proliferator-activated receptor delta/0.448
3vruYS3Vitamin D3 receptor/0.448
3vtdTKDVitamin D3 receptor/0.448
4e37NDPCatalase1.11.1.60.448
4ma628EAra h 8 allergen/0.448
4n57ADPAPH(2'')-Id/0.448
1eioGCHGastrotropin/0.447
1g2vTTPGlucose-1-phosphate thymidylyltransferase/0.447
1kzjCB3Thymidylate synthase/0.447
2vssACOHydroxycinnamoyl-CoA hydratase-lyase4.1.2.410.447
3dolGWIPol protein/0.447
3fbsFADOxidoreductase/0.447
3g1rFIT3-oxo-5-beta-steroid 4-dehydrogenase/0.447
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.447
3pqbVGPPutative oxidoreductase/0.447
3s79ASDAromatase1.14.14.140.447
4lvg20ONicotinamide phosphoribosyltransferase2.4.2.120.447
5cwa0GAAnthranilate synthase component 14.1.3.270.447
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.446
1unlRRCCyclin-dependent-like kinase 52.7.11.10.446
2rhrEMOPutative ketoacyl reductase1.3.10.446
2znpK55Peroxisome proliferator-activated receptor delta/0.446
3ipq965Oxysterols receptor LXR-alpha/0.446
3ozc4CTS-methyl-5'-thioadenosine phosphorylase/0.446
3q43D66M1 family aminopeptidase3.4.110.446
3vtcTK3Vitamin D3 receptor/0.446
3wv9FEGHmd co-occurring protein HcgE/0.446
4g2i0VQVitamin D3 receptor/0.446
4gk2L66Ephrin type-A receptor 32.7.10.10.446
4h380YXDitrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.446
4l0qNADAlcohol dehydrogenase class-3/0.446
4neuQ1AReceptor-interacting serine/threonine-protein kinase 12.7.11.10.446
1klkPMDDihydrofolate reductase1.5.1.30.445
1t85CAMCamphor 5-monooxygenase1.14.15.10.445
2chz093Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
2iyaZIOOleandomycin glycosyltransferase/0.445
2j3jHC4NADPH-dependent oxidoreductase 2-alkenal reductase1.3.1.740.445
2q7gCCLPyrrolysine--tRNA ligase/0.445
3datMTXDihydrofolate reductase/0.445
3jynNDPQuinone oxidoreductase/0.445
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.445
3tgyASCLactoperoxidase1.11.1.70.445
3vt5YI2Vitamin D3 receptor/0.445
3vtbTKAVitamin D3 receptor/0.445
4apuA2KProgesterone receptor/0.445
4asyN5YGlucose-1-phosphate thymidylyltransferase/0.445
4cdmFO1Deoxyribodipyrimidine photolyase/0.445
4nb6444Nuclear receptor ROR-gamma/0.445
1fxoTMPGlucose-1-phosphate thymidylyltransferase/0.444
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1j3jCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.444
1s9qOHTEstrogen-related receptor gamma/0.444
1tl7ONMAdenylate cyclase type 2/0.444
1tl7ONMAdenylate cyclase type 5/0.444
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.444
2fpcSCGStrictosidine synthase4.3.3.20.444
2jedLG8Protein kinase C theta type2.7.11.130.444
2ywvADPPhosphoribosylaminoimidazole-succinocarboxamide synthase/0.444
3dyaPZLGag-Pol polyprotein2.7.7.490.444
3gdpFAD(R)-mandelonitrile lyase 24.1.2.100.444
3jsuKA5Bifunctional dihydrofolate reductase-thymidylate synthase/0.444
3ns2PYVAbscisic acid receptor PYL2/0.444
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.444
4a0sCO8Octenoyl-CoA reductase/carboxylase/0.444
4a31MYAGlycylpeptide N-tetradecanoyltransferase/0.444
4az3S35Lysosomal protective protein3.4.16.50.444
4ge90L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.444
5akk1P8Bifunctional epoxide hydrolase 23.1.3.760.444
5k2bZMAAdenosine receptor A2a/0.444
1kqwRTLCellular retinol-binding protein type II/0.443
1lwlDSOCamphor 5-monooxygenase1.14.15.10.443
1rkhVD2Vitamin D3 receptor/0.443
2aclREARetinoic acid receptor RXR-alpha/0.443
2bl9CP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
2z3uCRRCytochrome P450/0.443
3gbk2PQPeroxisome proliferator-activated receptor gamma/0.443
3ijdC2FMethylenetetrahydrofolate reductase/0.443
3qf9NM8Serine/threonine-protein kinase pim-12.7.11.10.443
3s1dZIRCytokinin dehydrogenase 11.5.99.120.443
4anv751Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.443
4em9TCEPeroxisome proliferator-activated receptor gamma/0.443
4fqsLYAThymidylate synthase ThyA/0.443
4heu15JcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.443
4pnmNU1Tankyrase-22.4.2.300.443
3pwhZMAAdenosine receptor A2a/0.443
1h36R88Squalene--hopene cyclase4.2.1.1290.442
1tduDURThymidylate synthase/0.442
1uydPU8Heat shock protein HSP 90-alpha/0.442
1xxjUNCUricase1.7.3.30.442
2b35TCLEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.442
2belCBOCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.442
2oaxSNLMineralocorticoid receptor/0.442
2rehFADNitroalkane oxidase1.7.3.10.442
2uxpCLMHTH-type transcriptional regulator TtgR/0.442
2xvw9NRSerum albumin/0.442
3dhcCYKN-acyl homoserine lactonase AiiA3.1.1.810.442
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.442
3lakKR1Gag-Pol polyprotein2.7.7.490.442
3s7a684Dihydrofolate reductase1.5.1.30.442
3um81CYBifunctional dihydrofolate reductase-thymidylate synthase/0.442
3w0pADPHygromycin-B 4-O-kinase2.7.1.1630.442
4azwATPO-antigen chain terminator bifunctional methyltransferase/kinase WbdD/0.442
4ejh0QACytochrome P450 2A131.14.14.10.442
4ere0R2E3 ubiquitin-protein ligase Mdm26.3.20.442
4g8zTOPDihydrofolate reductase1.5.1.30.442
4odoFK5Peptidyl-prolyl cis-trans isomerase/0.442
1s3yTQTDihydrofolate reductase1.5.1.30.441
1xwsBI1Serine/threonine-protein kinase pim-12.7.11.10.441
1zeoC01Peroxisome proliferator-activated receptor gamma/0.441
2ij7TPFMycocyclosin synthase1.14.21.90.441
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
3c3eGDP2-phospho-L-lactate transferase/0.441
3h3t16HCollagen type IV alpha-3-binding protein/0.441
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.441
3qlhT27Gag-Pol polyprotein2.7.7.490.441
3vt8YI3Vitamin D3 receptor/0.441
4iaq2GM5-hydroxytryptamine receptor 1B/0.441
4llkMEWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
4lsjLSJGlucocorticoid receptor/0.441
4otpADPSerine/threonine-protein kinase RIO12.7.11.10.441
5e8xSTUTGF-beta receptor type-12.7.11.300.441
1diuBDMDihydrofolate reductase1.5.1.30.440
1h1pCMGCyclin-dependent kinase 22.7.11.220.440
1hfqMOTDihydrofolate reductase1.5.1.30.440
2fszOHTEstrogen receptor beta/0.440
2o1xTDP1-deoxy-D-xylulose-5-phosphate synthase2.2.1.70.440
2ociTYCValacyclovir hydrolase3.10.440
2rds1PL1-deoxypentalenic acid 11-beta-hydroxylase1.14.11.350.440
2wyaHMGHydroxymethylglutaryl-CoA synthase, mitochondrial2.3.3.100.440
3h3sH15Collagen type IV alpha-3-binding protein/0.440
3h4vNAPPteridine reductase 11.5.1.330.440
3njoPYVAbscisic acid receptor PYR1/0.440
3oq13OQCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
3srsM23Dihydrofolate reductase1.5.1.30.440
3vt7VDXVitamin D3 receptor/0.440
4c02TAKActivin receptor type-12.7.11.300.440
4jqh1MFAlr2278 protein/0.440
4l8u9AZSerum albumin/0.440
4n6hEJ4Delta-type opioid receptor/0.440
4o95245Cytokinin dehydrogenase 4/0.440
4obuPLPPyridoxal-dependent decarboxylase domain protein/0.440
4qemHC4Phospholipase A2 VRV-PL-VIIIa/0.440
4ruoBIVVitamin D3 receptor A/0.440
4xwtU5PRibonuclease J/0.440
5a3bAPRSIR2 family protein/0.440
5e8wSTUTGF-beta receptor type-12.7.11.300.440
3sn6P0GBeta-2 adrenergic receptor/0.440