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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4j03FVSBifunctional epoxide hydrolase 23.1.3.76

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4j03FVSBifunctional epoxide hydrolase 23.1.3.761.000
4haiI23Bifunctional epoxide hydrolase 23.1.3.760.644
5ai5BSUBifunctional epoxide hydrolase 23.1.3.760.594
3antS82Bifunctional epoxide hydrolase 23.3.2.100.562
5akk1P8Bifunctional epoxide hydrolase 23.1.3.760.561
3ansS38Bifunctional epoxide hydrolase 23.3.2.100.548
3otqMZLBifunctional epoxide hydrolase 23.3.2.100.545
3koo24DBifunctional epoxide hydrolase 23.3.2.100.539
1ek2CDUBifunctional epoxide hydrolase 2/0.503
4bb3KKAIsopenicillin N synthase1.21.3.10.453
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.446
3nr4PYVAbscisic acid receptor PYL2/0.444
3is9AC7Gag-Pol polyprotein2.7.7.490.440