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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ixc1JDGlucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4ixc1JDGlucokinase2.7.1.21.000
4iwv1J9Glucokinase2.7.1.20.604
4dhyS41Glucokinase2.7.1.20.484
3imxB84Glucokinase2.7.1.20.478
3h1vTK1Glucokinase2.7.1.20.468
3vev0H4Glucokinase2.7.1.20.465