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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4itp1GDCarbonic anhydrase 24.2.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
4itp1GDCarbonic anhydrase 24.2.1.11.000
3mmfD9HCarbonic anhydrase 24.2.1.10.849
3mnaDWHCarbonic anhydrase 24.2.1.10.847
3qykIE2Carbonic anhydrase 24.2.1.10.840
3m2nJ74Carbonic anhydrase 24.2.1.10.839
2wehFB1Carbonic anhydrase 24.2.1.10.838
4itoMPXCarbonic anhydrase 24.2.1.10.833
3n0nP9BCarbonic anhydrase 24.2.1.10.830
3m98E02Carbonic anhydrase 24.2.1.10.823
3oysOYSCarbonic anhydrase 24.2.1.10.821
2eu3FF3Carbonic anhydrase 24.2.1.10.817
3mhoJ43Carbonic anhydrase 24.2.1.10.807
4ilx1EZCarbonic anhydrase 24.2.1.10.806
3oimVZ5Carbonic anhydrase 24.2.1.10.805
3n3jWWVCarbonic anhydrase 24.2.1.10.804
3mzcS6ICarbonic anhydrase 24.2.1.10.803
1g52F2BCarbonic anhydrase 24.2.1.10.802
1kwrSG2Carbonic anhydrase 24.2.1.10.802
3s8xE59Carbonic anhydrase 24.2.1.10.801
2wegFBVCarbonic anhydrase 24.2.1.10.792
3eft3BSCarbonic anhydrase 24.2.1.10.792
4iwz1GOCarbonic anhydrase 24.2.1.10.789
1if6FBUCarbonic anhydrase 24.2.1.10.785
3sbiE90Carbonic anhydrase 24.2.1.10.785
1g1dFSBCarbonic anhydrase 24.2.1.10.782
2wejFB2Carbonic anhydrase 24.2.1.10.780
1if4FBSCarbonic anhydrase 24.2.1.10.779
3ffpLC1Carbonic anhydrase 24.2.1.10.778
3ml2SU0Carbonic anhydrase 24.2.1.10.778
4bf6X0QCarbonic anhydrase 24.2.1.10.776
3dazMZMCarbonic anhydrase 24.2.1.10.768
3sbhE65Carbonic anhydrase 24.2.1.10.768
4kniE1ECarbonic anhydrase 24.2.1.10.768
3s9tE49Carbonic anhydrase 24.2.1.10.764
1zsbAZMCarbonic anhydrase 24.2.1.10.763
4k13ETSCarbonic anhydrase 24.2.1.10.763
3n4bWWZCarbonic anhydrase 24.2.1.10.760
1bnmAL8Carbonic anhydrase 24.2.1.10.757
3dd82C7Carbonic anhydrase 24.2.1.10.754
2h15B19Carbonic anhydrase 24.2.1.10.753
3f4xKLTCarbonic anhydrase 24.2.1.10.752
3m5eJDRCarbonic anhydrase 24.2.1.10.749
3k2fNKXCarbonic anhydrase 24.2.1.10.748
4knjE1FCarbonic anhydrase 24.2.1.10.744
1i90INMCarbonic anhydrase 24.2.1.10.742
3oy0OY0Carbonic anhydrase 24.2.1.10.742
3saxE50Carbonic anhydrase 24.2.1.10.742
4m2vBZ1Carbonic anhydrase 24.2.1.10.739
1bn4AL9Carbonic anhydrase 24.2.1.10.738
1oq5CELCarbonic anhydrase 24.2.1.10.736
1bntAL2Carbonic anhydrase 24.2.1.10.735
3betCTFCarbonic anhydrase 24.2.1.10.729
3nb5R21Carbonic anhydrase 24.2.1.10.719
1g4jFFBCarbonic anhydrase 24.2.1.10.718
1i8zINLCarbonic anhydrase 24.2.1.10.718
3b4fTUOCarbonic anhydrase 24.2.1.10.714
3myqE27Carbonic anhydrase 24.2.1.10.714
3oyqOYQCarbonic anhydrase 24.2.1.10.713
3m2yBE0Carbonic anhydrase 24.2.1.10.710
3ni5C1HCarbonic anhydrase 24.2.1.10.708
4mo82VQCarbonic anhydrase 24.2.1.10.707
3m96E38Carbonic anhydrase 24.2.1.10.705
4kap1QVCarbonic anhydrase 24.2.1.10.702
1bnwTPDCarbonic anhydrase 24.2.1.10.699
1i9nIOACarbonic anhydrase 24.2.1.10.697
4m2rBZ1Carbonic anhydrase 24.2.1.10.696
1bn1AL5Carbonic anhydrase 24.2.1.10.695
1bnnAL1Carbonic anhydrase 24.2.1.10.693
1a42BZUCarbonic anhydrase 24.2.1.10.692
5fltVJJCarbonic anhydrase 24.2.1.10.690
3m40J45Carbonic anhydrase 24.2.1.10.689
3oikWZBCarbonic anhydrase 24.2.1.10.687
3kigDA4Carbonic anhydrase 24.2.1.10.685
3mhiJ90Carbonic anhydrase 24.2.1.10.684
1g45FSBCarbonic anhydrase 24.2.1.10.683
1i9mINWCarbonic anhydrase 24.2.1.10.682
2h4nAZMCarbonic anhydrase 24.2.1.10.681
3dc3AZMCarbonic anhydrase 24.2.1.10.681
1i91INQCarbonic anhydrase 24.2.1.10.679
1ttm667Carbonic anhydrase 24.2.1.10.679
3d9zD9ZCarbonic anhydrase 24.2.1.10.679
3l14I7BCarbonic anhydrase 24.2.1.10.678
1cilETSCarbonic anhydrase 24.2.1.10.676
1kwqSG1Carbonic anhydrase 24.2.1.10.672
2weoFBWCarbonic anhydrase 24.2.1.10.672
3dcsMZMCarbonic anhydrase 24.2.1.10.671
1cnyEG3Carbonic anhydrase 24.2.1.10.670
1eouSMSCarbonic anhydrase 24.2.1.10.669
4bf19FKCarbonic anhydrase 24.2.1.10.665
3t84SG6Carbonic anhydrase 24.2.1.10.664
1g54FFBCarbonic anhydrase 24.2.1.10.663
2powI7CCarbonic anhydrase 24.2.1.10.663
1oknSTBCarbonic anhydrase 24.2.1.10.659
1oklMNSCarbonic anhydrase 24.2.1.10.657
3n2pAYXCarbonic anhydrase 24.2.1.10.656
1okmSABCarbonic anhydrase 24.2.1.10.655
3t82SG4Carbonic anhydrase 24.2.1.10.654
3igpDT7Carbonic anhydrase 24.2.1.10.650
3mhlJ71Carbonic anhydrase 24.2.1.10.647
3po6DT9Carbonic anhydrase 24.2.1.10.647
4pxxCHDCarbonic anhydrase 24.2.1.10.646
1bnvAL7Carbonic anhydrase 24.2.1.10.645
3hkuTORCarbonic anhydrase 24.2.1.10.643
1g4oBSBCarbonic anhydrase 24.2.1.10.641
4dz7D02Carbonic anhydrase 24.2.1.10.637
3dd0EZLCarbonic anhydrase 24.2.1.10.632
3mhcARZCarbonic anhydrase 24.2.1.10.629
4kp8E1GCarbonic anhydrase 124.2.1.10.627
1bnqAL4Carbonic anhydrase 24.2.1.10.625
2x7tWZBCarbonic anhydrase 24.2.1.10.625
3d8wD8WCarbonic anhydrase 24.2.1.10.625
3m67E36Carbonic anhydrase 24.2.1.10.623
3mdzEZLCarbonic anhydrase 74.2.1.10.620
3dccD9ZCarbonic anhydrase 24.2.1.10.619
1if7SBRCarbonic anhydrase 24.2.1.10.618
3dcwEZLCarbonic anhydrase 24.2.1.10.614
1xpz4TZCarbonic anhydrase 24.2.1.10.613
4n16CHDCarbonic anhydrase 24.2.1.10.612
1xq04TRCarbonic anhydrase 24.2.1.10.611
3p5lIT5Carbonic anhydrase 24.2.1.10.611
4ht2V50Carbonic anhydrase 124.2.1.10.608
3t85SG7Carbonic anhydrase 24.2.1.10.601
3rz8RZ8Carbonic anhydrase 24.2.1.10.600
2x7uWZACarbonic anhydrase 24.2.1.10.599
4k0tD9ZCarbonic anhydrase 24.2.1.10.599
2wd2MS5Carbonic anhydrase 24.2.1.10.598
2q1qOSPCarbonic anhydrase 24.2.1.10.593
3zncBZ1Carbonic anhydrase 44.2.1.10.593
3bl1BL1Carbonic anhydrase 24.2.1.10.588
1ydaAZMCarbonic anhydrase 24.2.1.10.587
1jd0AZMCarbonic anhydrase 124.2.1.10.586
4lu3AZMCarbonic anhydrase 144.2.1.10.584
4kp5E1FCarbonic anhydrase 124.2.1.10.583
1i9qIOFCarbonic anhydrase 24.2.1.10.582
3f7uAG4Carbonic anhydrase 44.2.1.10.581
1if5FBTCarbonic anhydrase 24.2.1.10.580
1cnxEG2Carbonic anhydrase 24.2.1.10.577
1cnwEG1Carbonic anhydrase 24.2.1.10.574
1bnuAL3Carbonic anhydrase 24.2.1.10.573
4uovAZMCarbonate dehydratase/0.572
1if8SBSCarbonic anhydrase 24.2.1.10.565
4x5sAZMCarbonic anhydrase (Carbonate dehydratase)/0.561
3fw3ETSCarbonic anhydrase 44.2.1.10.559
1i9pIOECarbonic anhydrase 24.2.1.10.558
1bn3AL6Carbonic anhydrase 24.2.1.10.555
3v2jAZMCarbonic anhydrase 24.2.1.10.554
4k0zMZMCarbonic anhydrase 24.2.1.10.541
3f7bAG5Carbonic anhydrase 44.2.1.10.533
4knmE1ECarbonic anhydrase 134.2.1.10.529
3dbuD8WCarbonic anhydrase 24.2.1.10.527
4hu1V13Carbonic anhydrase 134.2.1.10.520
1rj6AZMCarbonic anhydrase 144.2.1.10.518
4knnE1FCarbonic anhydrase 134.2.1.10.518
1dmyAZMCarbonic anhydrase 5A, mitochondrial4.2.1.10.509
3lxeTORCarbonic anhydrase 14.2.1.10.497
4iae1DXAlr2278 protein/0.490
2vigFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.10.480
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.479
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.476
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.475
3p74FMNPentaerythritol tetranitrate reductase/0.475
3l6jZ90Alr2278 protein/0.473
2q1uNADPutative nucleotide sugar epimerase/ dehydratase/0.472
4kbyC2EStimulator of interferon genes protein/0.472
4mr92BXGamma-aminobutyric acid type B receptor subunit 1/0.471
1szgFNSCytochrome b2, mitochondrial1.1.2.30.469
3ixp834Ecdysone receptor/0.469
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.469
7stdCRPScytalone dehydratase4.2.1.940.469
3h3t16HCollagen type IV alpha-3-binding protein/0.468
4bfzZVZPantothenate kinase2.7.1.330.468
2gv8NDPThiol-specific monooxygenase1.14.130.467
4bfwZVWPantothenate kinase2.7.1.330.467
3elbC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.466
3fhxPXLPyridoxal kinase2.7.1.350.465
3fhxPLPPyridoxal kinase2.7.1.350.465
4bfvZVVPantothenate kinase2.7.1.330.465
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.464
2j3qTFLAcetylcholinesterase3.1.1.70.463
3p62FMNPentaerythritol tetranitrate reductase/0.463
1qpf858Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.462
2a84ATPPantothenate synthetase6.3.2.10.462
3pl8FADPyranose 2-oxidase/0.461
1h51FMNPentaerythritol tetranitrate reductase/0.460
1rzuADPGlycogen synthase 12.4.1.210.460
1towCRZFatty acid-binding protein, adipocyte/0.460
2c20NADUDP-glucose 4-epimerase/0.460
1h60STRPentaerythritol tetranitrate reductase/0.459
4rp8ASCAscorbate-specific PTS system EIIC component/0.458
4xsvC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.458
1bdmNAXMalate dehydrogenase/0.457
1q45FMN12-oxophytodienoate reductase 31.3.1.420.457
3b9xNOSPyrimidine-specific ribonucleoside hydrolase RihB3.2.2.80.457
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
4jicFMNGTN Reductase/0.457
4js1CTNBeta-galactoside alpha-2,6-sialyltransferase 12.4.99.10.457
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.456
3f03FMNPentaerythritol tetranitrate reductase/0.456
3dys5GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.455
3p80P80Pentaerythritol tetranitrate reductase/0.455
3zbsOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.455
4bcaFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.455
4dbc3QPAspartate aminotransferase2.6.1.10.455
4m83ERYOleandomycin glycosyltransferase2.4.10.455
2ldbNADL-lactate dehydrogenase1.1.1.270.454
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.454
4y1bNAPAntE/0.454
1vyrFMNPentaerythritol tetranitrate reductase/0.453
1xvaSAMGlycine N-methyltransferase2.1.1.200.453
2idkC2FGlycine N-methyltransferase2.1.1.200.453
2y1tDUDSPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS3.6.1.230.453
2z3nPHE_ARG_TYR_LEU_GLYLeucyl/phenylalanyl-tRNA--protein transferase2.3.2.60.453
3h3qH13Collagen type IV alpha-3-binding protein/0.453
3zoiM2WIsopenicillin N synthase1.21.3.10.453
1qyxASDEstradiol 17-beta-dehydrogenase 11.1.1.620.452
2a9y26AAdenosine kinase2.7.1.200.452
2abbFMNPentaerythritol tetranitrate reductase/0.452
3cotSTR3-oxo-5-beta-steroid 4-dehydrogenase/0.452
3h3r14HCollagen type IV alpha-3-binding protein/0.452
3qvpFADGlucose oxidase1.1.3.40.452
3to3ATPPetrobactin biosynthesis protein AsbB/0.452
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.452
1b8vNADMalate dehydrogenase/0.451
1q51CAA1,4-dihydroxy-2-naphthoyl-CoA synthase/0.451
2g1n1IGRenin3.4.23.150.451
4b1hAR6Poly(ADP-ribose) glycohydrolase3.2.1.1430.451
4djw0KPBeta-secretase 13.4.23.460.451
2fk8SAMHydroxymycolate synthase MmaA42.1.10.450
2yozOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.450
3vswR31Renin3.4.23.150.450
4ms1381Gamma-aminobutyric acid type B receptor subunit 1/0.450
4q71FADBifunctional protein PutA/0.450
1npdNADQuinate/shikimate dehydrogenase/0.449
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.449
2ddoATPPyridoxine/pyridoxal/pyridoxamine kinase/0.449
2rlcCHDCholoylglycine hydrolase3.5.1.240.449
2rqfJH3Hemolymph juvenile hormone binding protein/0.449
3atzFMNProstaglandin F2a synthase/0.449
4e2dFMNDehydrogenase/0.449
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.449
4ycoFMNtRNA-dihydrouridine(16) synthase/0.449
1h50FMNPentaerythritol tetranitrate reductase/0.448
3bk2U5PRibonuclease J/0.448
3e34ED1Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.448
3e34ED1Protein farnesyltransferase subunit beta2.5.1.580.448
4n1gCEIObelin/0.448
4w5kPLPAspartate aminotransferase, mitochondrial/0.448
1bwsNDPGDP-L-fucose synthase/0.447
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
1foaUD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase2.4.1.1010.447
1ndhFADNADH-cytochrome b5 reductase 31.6.2.20.447
1o9bNAIQuinate/shikimate dehydrogenase/0.447
1sa5BMVProtein farnesyltransferase subunit beta2.5.1.580.447
3b4yF42F420-dependent glucose-6-phosphate dehydrogenase/0.447
3m1vCOMMethyl-coenzyme M reductase I subunit alpha2.8.4.10.447
3m1vCOMMethyl-coenzyme M reductase I subunit beta2.8.4.10.447
4iah1DXAlr2278 protein/0.447
4mrm2BYGamma-aminobutyric acid type B receptor subunit 1/0.447
1h63FMNPentaerythritol tetranitrate reductase/0.446
1sa4JANProtein farnesyltransferase subunit beta2.5.1.580.446
1u1f183Uridine phosphorylase2.4.2.30.446
1xe65FPPlasmepsin-23.4.23.390.446
2dfvNADL-threonine 3-dehydrogenase/0.446
2hxzH7JCathepsin S3.4.22.270.446
2pncCLUPrimary amine oxidase, liver isozyme/0.446
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.446
3bxoUPPdTDP-3-amino-3,4,6-trideoxy-alpha-D-glucopyranose/0.446
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
6stdMS2Scytalone dehydratase4.2.1.940.446
1culFOKAdenylate cyclase type 2/0.445
1culFOKAdenylate cyclase type 5/0.445
1w34FADFerredoxin--NADP reductase1.18.1.20.445
2abaSTRPentaerythritol tetranitrate reductase/0.445
2q1tNADPutative nucleotide sugar epimerase/ dehydratase/0.445
3bv7NAP3-oxo-5-beta-steroid 4-dehydrogenase/0.445
3jypNADQuinate/shikimate dehydrogenase (NAD(+))/0.445
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
1cjtFOKAdenylate cyclase type 2/0.444
1cjtFOKAdenylate cyclase type 5/0.444
1jcq739Protein farnesyltransferase subunit beta2.5.1.580.444
1o1s1NHProtein farnesyltransferase subunit beta2.5.1.580.444
1w6hTITPlasmepsin-23.4.23.390.444
2b58COADiamine acetyltransferase 1/0.444
2gfxPMN3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.444
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
3qvrFADGlucose oxidase1.1.3.40.444
3v2uATPProtein GAL3/0.444
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
4psbGA3Cytokinin-specific binding protein/0.444
1c9wNAPAldose reductase-related protein 2/0.443
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
1rftPXMPyridoxal kinase2.7.1.350.443
1ygjRMCPyridoxal kinase2.7.1.350.443
2d29FADAcyl-CoA dehydrogenase/0.443
2iyfERYOleandomycin glycosyltransferase2.4.10.443
3af1GDPPantothenate kinase2.7.1.330.443
3eu5GBOProtein farnesyltransferase subunit beta2.5.1.580.443
3g0yP9A3-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.443
3qi4IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
1tojHCIAspartate aminotransferase2.6.1.10.442
2yj4ATPCopper-transporting ATPase/0.442
3apwDP0Alpha-1-acid glycoprotein 2/0.442
3zbzOVE2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.442
4a81DXCMajor pollen allergen Bet v 1-A/0.442
4g8jTHMUridine phosphorylase/0.442
4zj8SUVOrexin receptor type 1/0.442
1akcPPEAspartate aminotransferase, mitochondrial2.6.1.10.441
1jf2CZHObelin/0.441
1wxjIPLTryptophan synthase alpha chain/0.441
1yw8A75Methionine aminopeptidase 2/0.441
2q7oIMHPurine nucleoside phosphorylase2.4.2.10.441
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.441
3k8q22APurine nucleoside phosphorylase2.4.2.10.441
4wdgA2P2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.441
1e2nRCAThymidine kinase/0.440
1mxfMTXPutative pteridine reductase 2/0.440
1n5qTNCActVA 6 protein/0.440
2fxuBIDActin, alpha skeletal muscle/0.440
2yy2IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3p67FMNPentaerythritol tetranitrate reductase/0.440
4a83DXCMajor pollen allergen Bet v 1-A/0.440
4ey6GNTAcetylcholinesterase3.1.1.70.440
4lzwTHMUridine phosphorylase/0.440
4xbjIN5Alanine racemase, biosynthetic/0.440