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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4isg1FYGlucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4isg1FYGlucokinase2.7.1.21.000
4ise1FWGlucokinase2.7.1.20.593
4dch4DCGlucokinase2.7.1.20.576
4isf1FXGlucokinase2.7.1.20.564
4dhyS41Glucokinase2.7.1.20.500
4mleVO1Glucokinase2.7.1.20.495
3h1vTK1Glucokinase2.7.1.20.477
3vf60H6Glucokinase2.7.1.20.473
3a0iAJIGlucokinase2.7.1.20.472
3h3r14HCollagen type IV alpha-3-binding protein/0.469
4mlhVO2Glucokinase2.7.1.20.466
2e0nSAHPrecorrin-2 C20-methyltransferase/0.464
3s41S41Glucokinase2.7.1.20.455
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.452
2qimZEAClass 10 plant pathogenesis-related protein/0.451
1xddAAYIntegrin alpha-L/0.446
2xviFADPutative flavin-containing monooxygenase/0.446
3h3sH15Collagen type IV alpha-3-binding protein/0.444
3vev0H4Glucokinase2.7.1.20.444
3h3t16HCollagen type IV alpha-3-binding protein/0.442
3id8MRKGlucokinase2.7.1.20.442
4ixc1JDGlucokinase2.7.1.20.442