sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4iqq | D16 | Thymidylate synthase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4iqq | D16 | Thymidylate synthase | / | 1.000 | |
| 1ci7 | CB3 | Thymidylate synthase | 2.1.1.45 | 0.523 | |
| 4irr | UMP | Thymidylate synthase | / | 0.506 | |
| 1ci7 | UMP | Thymidylate synthase | 2.1.1.45 | 0.503 | |
| 4eb4 | D16 | Thymidylate synthase | 2.1.1.45 | 0.496 | |
| 1hvy | D16 | Thymidylate synthase | 2.1.1.45 | 0.471 | |
| 2z3u | CRR | Cytochrome P450 | / | 0.459 | |
| 4b4w | 9L9 | Bifunctional protein FolD | / | 0.457 | |
| 3l0l | HC3 | Nuclear receptor ROR-gamma | / | 0.456 | |
| 1i00 | D16 | Thymidylate synthase | 2.1.1.45 | 0.455 | |
| 1n83 | CLR | Nuclear receptor ROR-alpha | / | 0.452 | |
| 4b1f | KRH | Glutamate racemase | / | 0.451 | |
| 1an5 | CB3 | Thymidylate synthase | / | 0.450 | |
| 3bgx | MEF | Thymidylate synthase | / | 0.449 | |
| 1tdu | DUR | Thymidylate synthase | / | 0.448 | |
| 2hdh | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.447 | |
| 1pkf | EPD | Epothilone C/D epoxidase | 1.14 | 0.442 | |
| 4bj9 | UHB | Tankyrase-2 | 2.4.2.30 | 0.442 | |
| 4iae | 1DX | Alr2278 protein | / | 0.442 | |
| 4r20 | AER | Cytochrome P450 family 17 polypeptide 2 | / | 0.442 |