Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ikeADPAdenylate kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4ikeADPAdenylate kinase/1.000
4jldADPAdenylate kinase/0.609
4jloADPAdenylate kinase/0.561
4jl5ADPAdenylate kinase/0.538
4jkyADPAdenylate kinase/0.477
4jl6ADPAdenylate kinase/0.472
4cf7ADPAdenylate kinase/0.454