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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iakADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4iakADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.111.000
4iazADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.605
4iayADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.598
3x2vATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.534
3x2wATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.505
2uzvSS5cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.498
2uzuL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.497
4iacACPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.487
2f7e2EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.482
2gu8796cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.480
2uw0GVKcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.475
4xw4ANPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.475
3e8cG96cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.473
1jbpADPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.472
2uzwSS4cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.470
1ydtIQBcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.465
2oh02PYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.463
2f7z6EAcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.461
3dndLL2cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.460
3cqwCQWRAC-alpha serine/threonine-protein kinase2.7.11.10.452
1ydrIQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.451
4ekkANPRAC-alpha serine/threonine-protein kinase2.7.11.10.449
1q8tY27cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.448
3e8eG98cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.447
3x2uATPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.447
2vo0M03cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.446
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444
2uw4L15cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444
2vo6M05cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444
4yxsEMUcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.444
2uw5GVNcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.443
3ow3SMYcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.440