sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4i9b | NAD | Putative betaine aldehyde dehyrogenase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4i9b | NAD | Putative betaine aldehyde dehyrogenase | / | 1.000 | |
| 3iwj | NAD | Aminoaldehyde dehydrogenase | / | 0.558 | |
| 3iwk | NAD | Aminoaldehyde dehydrogenase | / | 0.528 | |
| 3n83 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.516 | |
| 4fqf | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.494 | |
| 2j5n | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.492 | |
| 2ehu | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.491 | |
| 3ju8 | NAD | N-succinylglutamate 5-semialdehyde dehydrogenase | 1.2.1.71 | 0.485 | |
| 4pxl | NAD | Aldehyde dehydrogenase3 | / | 0.483 | |
| 2ehq | NAP | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.477 | |
| 2eii | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.474 | |
| 1o02 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.473 | |
| 2j40 | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.473 | |
| 1o00 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.470 | |
| 4fr8 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.467 | |
| 4fr8 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.466 | |
| 2eit | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.465 | |
| 2bja | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.464 | |
| 1cw3 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.463 | |
| 2onm | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.461 | |
| 5eyu | NAD | Betaine-aldehyde dehydrogenase | / | 0.461 | |
| 1o01 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.459 | |
| 1nzz | NAI | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.456 | |
| 4go2 | TAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.456 | |
| 1wnb | NAI | Gamma-aminobutyraldehyde dehydrogenase | 1.2.1.19 | 0.453 | |
| 4pt3 | NDP | Aldehyde dehydrogenase | / | 0.453 | |
| 3v9l | NAD | Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial | 1.2.1.88 | 0.451 | |
| 4nmj | NAP | Aldehyde dehydrogenase | / | 0.443 |