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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4i5xFLFAldo-keto reductase family 1 member B101.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity
Align
4i5xFLFAldo-keto reductase family 1 member B101.1.11.000
3f3y4OABile salt sulfotransferase2.8.2.140.510
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.500
1u65CP0Acetylcholinesterase3.1.1.70.493
5dsg0HKMuscarinic acetylcholine receptor M4/0.488
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.484
1y2bDEEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.483
3af1GDPPantothenate kinase2.7.1.330.483
1ypeUIPProthrombin3.4.21.50.482
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.479
2b8jADNClass B acid phosphatase3.1.3.20.478
1ni4TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.477
1ni4TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.477
3tvxPNXcAMP-specific 3',5'-cyclic phosphodiesterase 4A3.1.4.530.476
1xf0ASDAldo-keto reductase family 1 member C3/0.475
2xujTZ5Acetylcholinesterase3.1.1.70.475
4jq3ZOMAldo-keto reductase family 1 member C2/0.474
4u163C0Muscarinic acetylcholine receptor M3/0.474
1mabADPATP synthase subunit beta, mitochondrial3.6.3.140.473
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.472
4bfsZVSPantothenate kinase2.7.1.330.472
4llkMEWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.472
1nqvLMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.471
2ipiAKYAclacinomycin-N/aclacinomycin-A oxidase/0.471
3zv7NHGAcetylcholinesterase3.1.1.70.471
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.470
2bd0NAPSepiapterin reductase/0.470
2ociTYCValacyclovir hydrolase3.10.470
3mjrAC2Deoxycytidine kinase2.7.1.740.470
3stdMQ0Scytalone dehydratase4.2.1.940.470
4ajm3A6cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.470
5cxv0HKMuscarinic acetylcholine receptor M1/0.470
1xngDNDNH(3)-dependent NAD(+) synthetase6.3.1.50.469
2zf051UProthrombin3.4.21.50.469
2zs8ADPPantothenate kinase2.7.1.330.469
4a802ANMajor pollen allergen Bet v 1-A/0.469
4phlPILPhosphodiesterase/0.469
1blzACVIsopenicillin N synthase1.21.3.10.468
2cbqTH2Neocarzinostatin/0.468
2y0jAXCcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.468
3bjcWANcGMP-specific 3',5'-cyclic phosphodiesterase/0.467
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.467
4fcb0T7cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.467
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.466
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.466
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.466
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.466
4jq4IMNAldo-keto reductase family 1 member C2/0.466
4u95MIYMultidrug efflux pump subunit AcrB/0.466
1lkeDOGBilin-binding protein/0.465
1t7o152Carnitine O-acetyltransferase2.3.1.70.465
2dv0ZSTAldose reductase1.1.1.210.465
2zfq45UProthrombin3.4.21.50.465
3g1rNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.465
4ajdF04cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.465
2geuCOKPantothenate kinase2.7.1.330.464
1s36CEIObelin/0.463
1w4lGL8Acetylcholinesterase3.1.1.70.463
2w6cBM4Acetylcholinesterase3.1.1.70.463
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.463
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.463
4ajfF03cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.463
4lm4JPZcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.463
1aquESTEstrogen sulfotransferase, testis isoform2.8.2.40.462
3exfTPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial1.2.4.10.462
3exfTPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial1.2.4.10.462
3zc3FADFerredoxin--NADP reductase1.18.1.20.462
2xuhTZ4Acetylcholinesterase3.1.1.70.461
3af3GCPPantothenate kinase2.7.1.330.461
3zkyWT4Isopenicillin N synthase1.21.3.10.461
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.461
3bv7NAP3-oxo-5-beta-steroid 4-dehydrogenase/0.460
4jtrIZPAldo-keto reductase family 1 member C2/0.460
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.459
1zgbA1EAcetylcholinesterase3.1.1.70.459
2qw8NAPEugenol synthase 11.1.1.3180.459
4fam0SZAldo-keto reductase family 1 member C3/0.459
4mrm2BYGamma-aminobutyric acid type B receptor subunit 1/0.459
1obnASVIsopenicillin N synthase1.21.3.10.458
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.458
2zi224UProthrombin3.4.21.50.458
3qen5BTDeoxycytidine kinase2.7.1.740.458
4fcd0T6cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.458
4oew5IOcGMP-specific 3',5'-cyclic phosphodiesterase/0.458
1vkgCRIHistone deacetylase 83.5.1.980.457
2j3qTFLAcetylcholinesterase3.1.1.70.457
3af4GCPPantothenate kinase2.7.1.330.457
3sn7540cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.457
4i6f1C7Serine/threonine-protein kinase PLK22.7.11.210.457
4oex5EOcGMP-specific 3',5'-cyclic phosphodiesterase/0.457
1d3dBZTProthrombin3.4.21.50.456
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.456
2e0nSAHPrecorrin-2 C20-methyltransferase/0.456
2ovvPFHcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.456
3ce0P34Poly [ADP-ribose] polymerase 32.4.2.300.456
3qpoPFRcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.456
3qwc98PProthrombin3.4.21.50.456
4kn0MTXFolate receptor beta/0.456
1ex75GPGuanylate kinase2.7.4.80.455
2vcmM11Isopenicillin N synthase1.21.3.10.455
3fowIMHPurine nucleoside phosphorylase/0.455
4daj0HKMuscarinic acetylcholine receptor M3/0.455
1d3pBT3Prothrombin3.4.21.50.454
1gaqFADFerredoxin/0.454
1z3n3NAAldose reductase1.1.1.210.454
1zrb062Prothrombin3.4.21.50.454
3dopNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.454
3g58988cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.454
3uzzTES3-oxo-5-beta-steroid 4-dehydrogenase/0.454
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.454
4fa30SLAldo-keto reductase family 1 member C3/0.454
4hmn16JAldo-keto reductase family 1 member C3/0.454
4i9z5BAcGMP-specific 3',5'-cyclic phosphodiesterase/0.454
4x3uSVRChromobox protein homolog 7/0.454
1a26CNAPoly [ADP-ribose] polymerase 12.4.2.300.453
1so2666cGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.453
1w6rGNTAcetylcholinesterase3.1.1.70.453
3c1oNAPEugenol synthase/0.453
3ld5LDTAldose reductase1.1.1.210.453
3wg6NDPNADPH-dependent conjugated polyketone reductase C1/0.453
1kmsLIHDihydrofolate reductase1.5.1.30.452
1sojIBMcGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.452
1y2d4DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.452
2bjsACVIsopenicillin N synthase1.21.3.10.452
3c49KU8Poly [ADP-ribose] polymerase 32.4.2.300.452
3wavDWVEctonucleotide pyrophosphatase/phosphodiesterase family member 23.1.4.390.452
3zkuHCVIsopenicillin N synthase1.21.3.10.452
4bftZVTPantothenate kinase2.7.1.330.452
4g8cC6LAlpha/beta hydrolase fold protein/0.452
1crbRTLRetinol-binding protein 1/0.451
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.451
2fz9ZSTAldose reductase1.1.1.210.451
2hv5ZSTAldose reductase1.1.1.210.451
3ar6TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.451
3caqNDP3-oxo-5-beta-steroid 4-dehydrogenase/0.451
3g4kROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.451
3n39FMNProtein NrdI/0.451
4kp61S1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.451
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.451
4n3l2FNProthrombin3.4.21.50.451
4pnmNU1Tankyrase-22.4.2.300.451
1jwtBLIProthrombin3.4.21.50.450
1lnmDTXBilin-binding protein/0.450
1z5uCMPClass B acid phosphatase/0.450
2zhw12UProthrombin3.4.21.50.450
3fznD7KBenzoylformate decarboxylase4.1.1.70.450
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.450
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.450
3vo2FADFerredoxin--NADP reductase/0.450
3zj0ACOPutative acetyltransferase OgpAT/0.450
4dbw511Aldo-keto reductase family 1 member C3/0.450
1fvpFMANon-fluorescent flavoprotein/0.449
1h42FADFerredoxin--NADP reductase1.18.1.20.449
1ro6ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.449
1t40ID5Aldose reductase1.1.1.210.449
2f3815MAldo-keto reductase family 1 member C3/0.449
2zevIPEGeranylgeranyl pyrophosphate synthase/0.449
3nu03TUDihydrofolate reductase1.5.1.30.449
3ug8IMNAldo-keto reductase family 1 member C3/0.449
4zasTYDCalS13/0.449
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.448
1t4v14AProthrombin3.4.21.50.448
1tfz8694-hydroxyphenylpyruvate dioxygenase1.13.11.270.448
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.448
2hzqSTRApolipoprotein D/0.448
2iki388Aldose reductase1.1.1.210.448
2jj8AZZDeoxynucleoside kinase/0.448
2pd9FIDAldose reductase1.1.1.210.448
2pzn393Aldose reductase1.1.1.210.448
2zsbADPPantothenate kinase2.7.1.330.448
3cotSTR3-oxo-5-beta-steroid 4-dehydrogenase/0.448
3ntrNADInositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase1.1.1.180.448
3up3XCAaceDAF-12/0.448
4j0y1H6Beta-secretase 13.4.23.460.448
4l5b1UXDeoxycytidine kinase2.7.1.740.448
4mv1ADPBiotin carboxylase6.3.4.140.448
1nzq162Prothrombin3.4.21.50.447
1qtiGNTAcetylcholinesterase3.1.1.70.447
2b04CHOPhospholipase A2, major isoenzyme3.1.1.40.447
2fzbTOLAldose reductase1.1.1.210.447
2iqdLPAAldose reductase1.1.1.210.447
2nvcITAAldose reductase1.1.1.210.447
2wo7ASVIsopenicillin N synthase1.21.3.10.447
3d73NBBPheromone-binding protein ASP1/0.447
3gytDL4Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily/0.447
3hmvHBTcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.447
4ax9N5NProthrombin3.4.21.50.447
4c77N01Phenylacetone monooxygenase1.14.13.920.447
4glx0XSDNA ligase6.5.1.20.447
1dx6GNTAcetylcholinesterase3.1.1.70.446
1queFADFerredoxin--NADP reductase1.18.1.20.446
1ry0PG2Aldo-keto reductase family 1 member C3/0.446
1zgcA2EAcetylcholinesterase3.1.1.70.446
1zknIBMcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.446
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.446
2xukTZ5Acetylcholinesterase3.1.1.70.446
2xupTZ5Acetylcholinesterase3.1.1.70.446
3ghuLDTAldose reductase1.1.1.210.446
4a81DXCMajor pollen allergen Bet v 1-A/0.446
4ajgF07cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.446
4j171HQBeta-secretase 13.4.23.460.446
4jlm1NNDeoxycytidine kinase2.7.1.740.446
1q6nP90Tyrosine-protein phosphatase non-receptor type 13.1.3.480.445
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.445
1w6jR71Lanosterol synthase5.4.99.70.445
1xorZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
2pdfZSTAldose reductase1.1.1.210.445
2pdu393Aldose reductase1.1.1.210.445
2psjCEIRenilla-luciferin 2-monooxygenase1.13.12.50.445
2xi4AFTAcetylcholinesterase3.1.1.70.445
3aivHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase, chloroplastic3.2.1.1820.445
3ar4TG1Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.445
3b8xG4MPutative pyridoxamine 5-phosphate-dependent dehydrase/0.445
3q9bB3NAcetylpolyamine amidohydrolase/0.445
4ddl0JQcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.445
4eilFOLBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.445
4fk3325Serine/threonine-protein kinase B-raf2.7.11.10.445
4j7gTRHPCZA361.3/0.445
1mczTDPBenzoylformate decarboxylase4.1.1.70.444
1p8dCO1Oxysterols receptor LXR-beta/0.444
1pq6965Oxysterols receptor LXR-beta/0.444
2aclL05Oxysterols receptor LXR-alpha/0.444
2bdyUNBProthrombin3.4.21.50.444
2h3wHC5Carnitine O-acetyltransferase2.3.1.70.444
2o8h227cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.444
3dr7GPDGDP-perosamine synthase/0.444
4k9pTPPBenzoylformate decarboxylase4.1.1.70.444
4l321VFTankyrase-22.4.2.300.444
4xo7ASDAldo-keto reductase family 1 member C2/0.444
1ihiIU5Aldo-keto reductase family 1 member C2/0.443
1mu6CDAProthrombin3.4.21.50.443
1paxDHQPoly [ADP-ribose] polymerase 12.4.2.300.443
2xaeADPKinesin-like protein KIF11/0.443
3fu83DMLaccase-11.10.3.20.443
3g4gD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
3p2vDOYAldose reductase1.1.1.210.443
3t0kDCQSulfide-quinone reductase/0.443
3tfuPL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase2.6.1.620.443
4bb3KKAIsopenicillin N synthase1.21.3.10.443
4ey7E20Acetylcholinesterase3.1.1.70.443
4jq2SUZAldo-keto reductase family 1 member C2/0.443
4kd79DRDihydrofolate reductase1.5.1.30.443
4m6l21VDihydrofolate reductase1.5.1.30.443
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.442
2ovyPFJcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.442
3g4lROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
3h7rNAPAldo-keto reductase family 4 member C8/0.442
3r8hZOMAldo-keto reductase family 1 member C3/0.442
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.442
4kxjP34Nucleoprotein/0.442
1ah3TOLAldose reductase1.1.1.210.441
1e66HUXAcetylcholinesterase3.1.1.70.441
1mczRMNBenzoylformate decarboxylase4.1.1.70.441
1pq944BOxysterols receptor LXR-beta/0.441
1qv0CZHObelin/0.441
2r6jNDPEugenol synthase 11.1.1.3180.441
2rc6FADFerredoxin--NADP reductase/0.441
2xkdT3MSerine/threonine-protein kinase Nek22.7.11.10.441
2xnpWCXSerine/threonine-protein kinase Nek22.7.11.10.441
2zs9ADPPantothenate kinase2.7.1.330.441
3ekuCY9Actin-5C/0.441
3eq02TSProthrombin3.4.21.50.441
3hf8ML0Tryptophan 5-hydroxylase 11.14.16.40.441
3njoPYVAbscisic acid receptor PYR1/0.441
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.441
4a4xJUPSerine/threonine-protein kinase Nek22.7.11.10.441
4bamMM9Prothrombin3.4.21.50.441
4heu15JcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
4i6h1C8Serine/threonine-protein kinase PLK22.7.11.210.441
1gjrFADFerredoxin--NADP reductase1.18.1.20.440
1n83CLRNuclear receptor ROR-alpha/0.440
1ypgUIRProthrombin3.4.21.50.440
2vbpVB1Isopenicillin N synthase1.21.3.10.440
2zhf49UProthrombin3.4.21.50.440
3iakEV1cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
3qkzNAPAldose reductase-related protein 11.1.1.210.440
4cjx9L9C-1-tetrahydrofolate synthase, cytoplasmic, putative/0.440
4jpg1OXPyruvate kinase PKM2.7.1.400.440
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.440
5cmx0G6Prothrombin3.4.21.50.440