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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4i2pG73Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4i2pG73Gag-Pol polyprotein2.7.7.491.000
4g1qT27Gag-Pol polyprotein2.7.7.490.751
4id5T27Gag-Pol polyprotein2.7.7.490.737
2zd1T27Gag-Pol polyprotein2.7.7.490.689
4ifvT27Gag-Pol polyprotein2.7.7.490.660
3qlhT27Gag-Pol polyprotein2.7.7.490.636
2ze2T27Gag-Pol polyprotein2.7.7.490.591
1c1bGCAGag-Pol polyprotein2.7.7.490.559
3is9AC7Gag-Pol polyprotein2.7.7.490.539
4kfbT27Gag-Pol polyprotein2.7.7.490.524
1tl3H20Gag-Pol polyprotein2.7.7.490.522
1tktH12Gag-Pol polyprotein2.7.7.490.519
3ffi3OBGag-Pol polyprotein2.7.7.490.514
4ig3T27Gag-Pol polyprotein2.7.7.490.505
1tl1H18Gag-Pol polyprotein2.7.7.490.504
3bgrT27Gag-Pol polyprotein2.7.7.490.500
1rt4UC1Gag-Pol polyprotein2.7.7.490.484
3mec65BGag-Pol polyprotein2.7.7.490.482
4rw6494Gag-Pol polyprotein2.7.7.490.479
3m8qDJZGag-Pol polyprotein2.7.7.490.476
3irxUDRGag-Pol polyprotein2.7.7.490.468
3nbpJGZGag-Pol polyprotein2.7.7.490.468
1rt7UC4Gag-Pol polyprotein2.7.7.490.467
3m8p65BGag-Pol polyprotein2.7.7.490.466
1tkzH16Gag-Pol polyprotein2.7.7.490.465
3med65BGag-Pol polyprotein2.7.7.490.458
3meeT27Gag-Pol polyprotein2.7.7.490.457
1rt2TNKGag-Pol polyprotein2.7.7.490.456
3lalKRVGag-Pol polyprotein2.7.7.490.452
2opsHBQGag-Pol polyprotein2.7.7.490.451
4kko1REGag-Pol polyprotein2.7.7.490.451
3dleGFAGag-Pol polyprotein2.7.7.490.449
4mfb29TGag-Pol polyprotein2.7.7.490.449
1s9eADBGag-Pol polyprotein2.7.7.490.447
3dmjGWEPol protein/0.447
4ko0JLJGag-Pol polyprotein2.7.7.490.447
2w9sTOPDihydrofolate reductase type 1 from Tn40031.5.1.30.446
3t1a5MAGag-Pol polyprotein2.7.7.490.442