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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.291.000
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.643
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.633
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.601
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.593
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.558
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.550
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.513
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.497
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.490
3bloQEIQueuine tRNA-ribosyltransferase2.4.2.290.478
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.464
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.452
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.450
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.444
3gncQQQGlutaryl-CoA dehydrogenase/0.441
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.440