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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h50FADBiphenyl dioxygenase ferredoxin reductase subunit

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4h50FADBiphenyl dioxygenase ferredoxin reductase subunit/1.000
4h4sFADBiphenyl dioxygenase ferredoxin reductase subunit/0.598
2gr3FADFerredoxin reductase/0.595
4h4pFADBiphenyl dioxygenase ferredoxin reductase subunit/0.594
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/0.497
4h4rFADBiphenyl dioxygenase ferredoxin reductase subunit/0.478
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit/0.445