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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/1.000
2gqwFADFerredoxin reductase/0.739
2gr3FADFerredoxin reductase/0.668
4h4sFADBiphenyl dioxygenase ferredoxin reductase subunit/0.664
4h4pFADBiphenyl dioxygenase ferredoxin reductase subunit/0.646
4h4rFADBiphenyl dioxygenase ferredoxin reductase subunit/0.591
4h4tFADBiphenyl dioxygenase ferredoxin reductase subunit/0.587
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit/0.525
4h50FADBiphenyl dioxygenase ferredoxin reductase subunit/0.525
2gr1FADFerredoxin reductase/0.509
3gd3FADApoptosis-inducing factor 1, mitochondrial1.1.10.479
3ef6FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.468
5fs6FADApoptosis-inducing factor 1, mitochondrial1.1.10.458
4emjFADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.457
1gv4FADApoptosis-inducing factor 1, mitochondrial1.1.10.455
3lb8FADPutidaredoxin reductase1.18.1.50.443