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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h4o506Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4h4o506Gag-Pol polyprotein2.7.7.491.000
4h4m494Gag-Pol polyprotein2.7.7.490.516
4mfb29TGag-Pol polyprotein2.7.7.490.492
3ffi3OBGag-Pol polyprotein2.7.7.490.478
2jleI15Reverse transcriptase/RNaseH/0.474
4rw6494Gag-Pol polyprotein2.7.7.490.448
3e01PZ2Gag-Pol polyprotein2.7.7.490.441