Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4h2pFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4h2pFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/1.000
3aljFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.648
4jy2FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.568
3almFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.563
3gmbFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.465