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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.673
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.659
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.580
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.570
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.570
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.558
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.550
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.532
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.519
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.516
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.513
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.502
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.501
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.495
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.492
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.490
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.488
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.488
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.484
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.480
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.477
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.473
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.469
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.467
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.460
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.458
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.452
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.449
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.448