sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4gm4	TZD	Benzoylformate decarboxylase	4.1.1.7

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4gm4	TZD	Benzoylformate decarboxylase	4.1.1.7	1.000
4mpr	TPP	Benzoylformate decarboxylase	4.1.1.7	0.844
4gg1	TZD	Benzoylformate decarboxylase	4.1.1.7	0.746
1po7	TZD	Benzoylformate decarboxylase	4.1.1.7	0.632
4k9o	TPP	Benzoylformate decarboxylase	4.1.1.7	0.560
4k9n	TZD	Benzoylformate decarboxylase	4.1.1.7	0.548
1mcz	TDP	Benzoylformate decarboxylase	4.1.1.7	0.542
4juc	TPP	Benzoylformate decarboxylase	4.1.1.7	0.527
1mcz	RMN	Benzoylformate decarboxylase	4.1.1.7	0.520
4juf	TPP	Benzoylformate decarboxylase	4.1.1.7	0.504
3fzn	D7K	Benzoylformate decarboxylase	4.1.1.7	0.487
4jub	TPP	Benzoylformate decarboxylase	4.1.1.7	0.480
4mpp	TZD	Benzoylformate decarboxylase	4.1.1.7	0.466
4k9p	TPP	Benzoylformate decarboxylase	4.1.1.7	0.463