sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4gbe	SAH	DNA adenine methylase	2.1.1.72

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4gbe	SAH	DNA adenine methylase	2.1.1.72	1.000
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.618
4rtl	SFG	DNA adenine methylase	2.1.1.72	0.554
4rtj	SFG	DNA adenine methylase	2.1.1.72	0.551
2ore	SAH	DNA adenine methylase	2.1.1.72	0.532
4rts	SAM	DNA adenine methylase	2.1.1.72	0.531
4rtm	SAM	DNA adenine methylase	2.1.1.72	0.513
2dpm	SAM	Modification methylase DpnIIA	2.1.1.72	0.501
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.495
4rtk	SAH	DNA adenine methylase	2.1.1.72	0.472
4rtn	SAH	DNA adenine methylase	2.1.1.72	0.462