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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.291.000
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.510
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.493
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.467
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.463
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.455
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.446
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.442