Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4fpy | 0V8 | Sialidase B | 3.2.1.18 |
PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
---|---|---|---|---|---|
4fpy | 0V8 | Sialidase B | 3.2.1.18 | 1.000 | |
2q1w | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.480 | |
4j0v | 1H7 | Beta-secretase 1 | 3.4.23.46 | 0.457 | |
4f1l | 0RY | Poly [ADP-ribose] polymerase 14 | 2.4.2.30 | 0.456 | |
3rsv | 3RS | Beta-secretase 1 | 3.4.23.46 | 0.444 | |
2gjl | FMN | Nitronate monooxygenase | 1.13.12.16 | 0.443 | |
3ut5 | LOC | Tubulin beta chain | / | 0.442 | |
2xvi | FAD | Putative flavin-containing monooxygenase | / | 0.440 | |
2xyt | TC9 | Soluble acetylcholine receptor | / | 0.440 |