sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4fln | UNK_UNK_TRP_UNK | Protease Do-like 2, chloroplastic | 3.4.21 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 4fln | UNK_UNK_TRP_UNK | Protease Do-like 2, chloroplastic | 3.4.21 | 1.000 | |
| 1xq6 | NAP | Uncharacterized protein At5g02240 | / | 0.446 | |
| 1ybm | NAP | Uncharacterized protein At5g02240 | / | 0.446 | |
| 2oap | ANP | Type II secretion system protein (GspE-2) | / | 0.440 | |
| 2w9s | TOP | Dihydrofolate reductase type 1 from Tn4003 | 1.5.1.3 | 0.440 |