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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4feu537Aminoglycoside 3'-phosphotransferase AphA1-IAB

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4feu537Aminoglycoside 3'-phosphotransferase AphA1-IAB/1.000
4fewPP2Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.521
4fevPP1Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.510
4fex0TOAminoglycoside 3'-phosphotransferase AphA1-IAB/0.470
4gkh0J9Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.467
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.459