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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4f31KAIGlutamate receptor 3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4f31KAIGlutamate receptor 3/1.000
1fw0KAIGlutamate receptor 2/0.583
4f3gKAIGlutamate receptor 3/0.563
1lbbKAIGlutamate receptor 2/0.525
2wkyIBCGlutamate receptor ionotropic, kainate 1/0.473
3c35KAIGlutamate receptor ionotropic, kainate 1/0.472
3c36KAIGlutamate receptor ionotropic, kainate 1/0.465
3c34KAIGlutamate receptor ionotropic, kainate 1/0.458
2pbwDOQGlutamate receptor ionotropic, kainate 1/0.454