scPDB - Distribution of Cavity Similarity values of 4du6 entry / Site 4

Distribution of Cavity similarities measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4du6	GTP	GTP cyclohydrolase 1

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity
4du6	GTP	GTP cyclohydrolase 1	/	1.000
1a9c	GTP	GTP cyclohydrolase 1	3.5.4.16	0.562
1a8r	GTP	GTP cyclohydrolase 1	3.5.4.16	0.505
1n3r	GTP	GTP cyclohydrolase 1	3.5.4.16	0.490
3tqx	PLP	2-amino-3-ketobutyrate coenzyme A ligase	/	0.476
1x1c	SAH	C-20 methyltransferase	/	0.475
3q43	D66	M1 family aminopeptidase	3.4.11	0.470
4a2a	ATP	Cell division protein FtsA	/	0.470
2a59	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.468
1wur	8DG	GTP cyclohydrolase 1	/	0.466
1h5q	NAP	NADP-dependent mannitol dehydrogenase	1.1.1.138	0.465
3gdp	FAD	(R)-mandelonitrile lyase 2	4.1.2.10	0.465
1pdh	FAS	p-hydroxybenzoate hydroxylase	/	0.460
5dp2	NAP	CurF	/	0.459
2x06	NAD	L-sulfolactate dehydrogenase	/	0.457
3exh	TPP	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	1.2.4.1	0.457
3exh	TPP	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	1.2.4.1	0.457
3ful	52D	Leukotriene A-4 hydrolase	3.3.2.6	0.456
3hy9	098	A disintegrin and metalloproteinase with thrombospondin motifs 5	3.4.24	0.456
2pk3	A2R	GDP-6-deoxy-D-mannose reductase	/	0.455
1ta6	177	Prothrombin	3.4.21.5	0.454
3o4r	NAP	Dehydrogenase/reductase SDR family member 4	1.1.1.184	0.452
1i7p	FAD	NADH-cytochrome b5 reductase 3	1.6.2.2	0.451
1xl8	152	Peroxisomal carnitine O-octanoyltransferase	2.3.1.137	0.451
2a2c	ADP	N-acetylgalactosamine kinase	2.7.1.157	0.450
2wya	HMG	Hydroxymethylglutaryl-CoA synthase, mitochondrial	2.3.3.10	0.450
4epl	JAI	Jasmonic acid-amido synthetase JAR1	6.3.2	0.450
2ejz	SAH	Diphthine synthase	/	0.449
4iqg	NAP	Short-chain dehydrogenase/reductase SDR	/	0.449
3fun	798	Leukotriene A-4 hydrolase	3.3.2.6	0.448
3iqi	ASN_GLU_ASN_ILE	Cysteine synthase	2.5.1.47	0.448
2a2d	ANP	N-acetylgalactosamine kinase	2.7.1.157	0.447
3hyg	099	A disintegrin and metalloproteinase with thrombospondin motifs 5	3.4.24	0.447
2r8o	T5X	Transketolase 1	/	0.446
3qt6	2P0	Mevalonate diphosphate decarboxylase	/	0.446
1ozp	ACO	Mycothiol acetyltransferase	2.3.1.189	0.445
2cns	ACO	Ribosomal-protein-alanine acetyltransferase	/	0.445
2zba	ZBA	Trichothecene 3-O-acetyltransferase	/	0.445
2g24	7IG	Renin	3.4.23.15	0.444
3opx	U5P	Suppressor of disruption of TFIIS	/	0.444
3wqm	B29	Diterpene synthase	3.1.7.8	0.444
4bfx	ZVX	Pantothenate kinase	2.7.1.33	0.444
1j49	NAD	D-lactate dehydrogenase	1.1.1.28	0.443
1qyw	5SD	Estradiol 17-beta-dehydrogenase 1	1.1.1.62	0.443
2q1w	NAD	Putative nucleotide sugar epimerase/ dehydratase	/	0.443
3dh7	FMN	Isopentenyl-diphosphate delta-isomerase	/	0.443
1kw8	BPY	Biphenyl-2,3-diol 1,2-dioxygenase	1.13.11.39	0.442
1qbq	HFP	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	/	0.442
1qbq	HFP	Protein farnesyltransferase subunit beta	2.5.1.58	0.442
1t4u	81A	Prothrombin	3.4.21.5	0.442
3ntr	NAD	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase	1.1.1.18	0.442
4bca	FAD	Alkyldihydroxyacetonephosphate synthase, peroxisomal	2.5.1.26	0.442
2ewm	NAD	(S)-1-Phenylethanol dehydrogenase	1.1.1.311	0.441
4bb3	KKA	Isopenicillin N synthase	1.21.3.1	0.441
4xo7	NAP	Aldo-keto reductase family 1 member C2	/	0.441
1ay0	TPP	Transketolase 1	2.2.1.1	0.440
1d4a	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.440
3d91	REM	Renin	3.4.23.15	0.440
3gwd	NAP	Cyclohexanone monooxygenase	/	0.440
3u9f	CLM	Chloramphenicol acetyltransferase	2.3.1.28	0.440