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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4dtiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.786
3oewNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.748
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.720
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.685
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.663
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.654
2aq8NAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.642
1enyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.598
2idzZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.576
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.566
4dquNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.561
2iebZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.559
1enzNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.558
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.544
4bqpNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.504
2ie0ZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.482
1bvrNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.481
4bgiI4IEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.475
4nr42LKCREB-binding protein/0.454
2po7CHDFerrochelatase, mitochondrial4.99.1.10.453
4g47TZFMycocyclosin synthase1.14.21.90.452
6cp4CAMCamphor 5-monooxygenase1.14.15.10.449
1xddAAYIntegrin alpha-L/0.448
4ktkKTKCytochrome P450/0.448
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.447
4l49CAMCamphor 5-monooxygenase1.14.15.10.447
1yrcCAMCamphor 5-monooxygenase1.14.15.10.446
4ek1CAMCamphor 5-monooxygenase1.14.15.10.446
3fwiCAMCamphor 5-monooxygenase1.14.15.10.445
4g48PZBMycocyclosin synthase1.14.21.90.445
4ktl1CQCytochrome P450/0.445
4q73FADBifunctional protein PutA/0.445
2ev9NAPShikimate dehydrogenase (NADP(+))/0.444
2he5NDPAldo-keto reductase family 1 member C211.1.10.444
2qa2FADPolyketide oxygenase CabE/0.443
2znnS44Peroxisome proliferator-activated receptor alpha/0.443
3kb1ADPIron-sulfur cluster carrier protein/0.443
2vn0TDZCytochrome P450 2C8/0.442
1eupASD6-deoxyerythronolide B hydroxylase/0.441