Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dkjSAHCytosine-specific methyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4dkjSAHCytosine-specific methyltransferase/1.000
9mhtSAHModification methylase HhaI2.1.1.370.493
7mhtSAHModification methylase HhaI2.1.1.370.472
2z6uSAHModification methylase HhaI2.1.1.370.459
5mhtSAHModification methylase HhaI2.1.1.370.457
1mhtSAHModification methylase HhaI2.1.1.370.454
2c7qSAHModification methylase HhaI2.1.1.370.450
1skmSAHModification methylase HhaI2.1.1.370.444