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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dhyS41Glucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4dhyS41Glucokinase2.7.1.21.000
3s41S41Glucokinase2.7.1.20.728
3vev0H4Glucokinase2.7.1.20.630
3imxB84Glucokinase2.7.1.20.572
4ixc1JDGlucokinase2.7.1.20.557
4iwv1J9Glucokinase2.7.1.20.539
4dch4DCGlucokinase2.7.1.20.523
3h1vTK1Glucokinase2.7.1.20.486
3a0iAJIGlucokinase2.7.1.20.483
3vf60H6Glucokinase2.7.1.20.474
4mlhVO2Glucokinase2.7.1.20.470
1u2gAPRNAD(P) transhydrogenase subunit alpha part 11.6.1.20.448
4jbtASDCytochrome P450 monooxygenase/0.448
1uzwCDHIsopenicillin N synthase1.21.3.10.444
3id8MRKGlucokinase2.7.1.20.444
3qm4PN0Cytochrome P450 2D6/0.441
1x8lOXRRetinol dehydratase/0.440
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.440
4j6cSTRCytochrome P450 monooxygenase/0.440