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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4dfk0L5DNA polymerase I, thermostable2.7.7.7

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4dfk0L5DNA polymerase I, thermostable2.7.7.71.000
4df80L4DNA polymerase I, thermostable2.7.7.70.616
4df40L3DNA polymerase I, thermostable2.7.7.70.584
1qtmTTPDNA polymerase I, thermostable2.7.7.70.570
3t3fN5PDNA polymerase I, thermostable2.7.7.70.561
1qsyDDSDNA polymerase I, thermostable2.7.7.70.510