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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d04FADPhenylacetone monooxygenase1.14.13.92

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4d04FADPhenylacetone monooxygenase1.14.13.921.000
2yltFADPhenylacetone monooxygenase1.14.13.920.629
2ylrFADPhenylacetone monooxygenase1.14.13.920.626
2ylwFADPhenylacetone monooxygenase1.14.13.920.563
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.508
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.458