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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4d03FADPhenylacetone monooxygenase1.14.13.92

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4d03FADPhenylacetone monooxygenase1.14.13.921.000
2ylrFADPhenylacetone monooxygenase1.14.13.920.736
2ylxFADPhenylacetone monooxygenase1.14.13.920.658
2ym2FADPhenylacetone monooxygenase1.14.13.920.649
4d04FADPhenylacetone monooxygenase1.14.13.920.629
2ylsFADPhenylacetone monooxygenase1.14.13.920.605
2yltFADPhenylacetone monooxygenase1.14.13.920.598
2ylzFADPhenylacetone monooxygenase1.14.13.920.566
1w4xFADPhenylacetone monooxygenase1.14.13.920.537
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.520
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.475
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.475
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.473
5dp2NAPCurF/0.463
1xddAAYIntegrin alpha-L/0.459
4opiFDAConserved Archaeal protein/0.451
2iko7IGRenin3.4.23.150.446
3kybFADUDP-galactopyranose mutase5.4.99.90.446
4gh5NADShort-chain dehydrogenase/reductase SDR/0.446
4u8iFDAUDP-galactopyranose mutase/0.446
2gh5FADGlutathione reductase, mitochondrial1.8.1.70.444
3d91REMRenin3.4.23.150.442
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.440
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.440